Back to structures

KF926093.1__AHC94109.1__T548_0031__00031

Bact-Vir

KF926093.1__AHC94109.1__T548_0031__00031

Identity

Accession:
KF926093 ↗
Kingdom:
phage

Quality

51.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6lxgA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.88 65.0 5.80e-01 77.8% 100.0%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.82 63.0 5.49e-01 83.3% 88.9%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.74 57.0 4.03e-01 85.2% 47.9%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.73 58.0 3.81e-01 88.9% 25.4%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.69 52.0 3.17e-01 83.3% 71.1%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.69 50.0 3.04e-01 79.6% 63.0%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 59.0 5.14e-01 100.0% 64.6%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.69 52.0 5.34e-01 85.2% 92.0%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.68 60.0 4.66e-01 100.0% 82.5%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.68 57.0 4.28e-01 100.0% 48.0%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 52.0 4.05e-01 85.2% 52.9%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 51.0 4.30e-01 85.2% 57.3%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.66 50.0 4.07e-01 85.2% 47.7%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 56.0 4.43e-01 100.0% 59.8%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 56.0 4.48e-01 100.0% 58.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.64 53.0 4.62e-01 100.0% 73.9%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.63 53.0 4.13e-01 100.0% 55.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 52.0 4.47e-01 100.0% 72.3%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 53.0 4.51e-01 100.0% 61.1%
4q0jA03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.62 41.0 3.11e-01 70.4% 28.9%
1lktA00 2.170.14.10 Mainly Beta › Beta Complex › Tailspike Protein; Chain › Phage P22 tailspike-like, N-terminal domain 0.61 55.0 4.38e-01 100.0% 73.1%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 53.0 3.99e-01 100.0% 55.6%
6womA02 3.30.1360.30 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › GAD-like domain 0.61 46.0 3.49e-01 85.2% 39.3%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.60 50.0 3.99e-01 100.0% 59.0%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 44.0 3.31e-01 85.2% 74.5%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.60 45.0 3.50e-01 88.9% 92.1%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 47.0 4.12e-01 90.7% 61.6%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.59 50.0 4.54e-01 100.0% 73.7%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 42.0 3.20e-01 83.3% 31.5%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 44.0 3.60e-01 83.3% 59.6%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 47.0 3.60e-01 98.1% 79.2%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 45.0 3.32e-01 90.7% 33.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 3.98e-01 79.6% 71.2%
6eo5B01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 41.0 2.80e-01 83.3% 81.6%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 40.0 3.48e-01 85.2% 44.3%
1dyqA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 47.0 3.63e-01 100.0% 52.1%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.57 40.0 3.12e-01 85.2% 29.7%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.56 43.0 4.25e-01 100.0% 80.3%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.34e-01 94.4% 74.2%
1vq8B03 3.30.1430.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L3; Chain: B; domain 2, › 0.55 44.0 3.70e-01 100.0% 81.1%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.18e-01 75.9% 91.8%
2bkfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 44.0 4.03e-01 100.0% 95.2%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.54 39.0 3.54e-01 88.9% 55.1%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 43.0 3.11e-01 100.0% 41.4%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 43.0 3.94e-01 100.0% 96.2%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.53 44.0 3.34e-01 100.0% 82.9%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 41.0 3.96e-01 87.0% 91.9%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 37.0 2.49e-01 77.8% 61.1%
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 37.0 3.78e-01 75.9% 100.0%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.74e-01 92.6% 88.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.71e-01 92.6% 67.5%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 40.0 3.66e-01 100.0% 97.6%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3968877 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.80 66.0 5.88e-01 88.9% 94.7%
4632256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 58.0 5.20e-01 81.5% 94.7%
5063230 304.4.1.1 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.74 58.0 5.24e-01 87.0% 98.7%
3200703 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.74 65.0 5.62e-01 100.0% 96.5%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.72 62.0 5.67e-01 100.0% 84.0%
3723377 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.72 64.0 4.88e-01 100.0% 65.6%
3686690 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.72 64.0 5.52e-01 100.0% 96.5%
3590658 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.19e-01 85.2% 94.3%
5040024 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.70 62.0 4.93e-01 100.0% 60.9%
5009755 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.68 54.0 3.61e-01 88.9% 23.3%
3607227 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.67 49.0 5.08e-01 77.8% 96.0%
3972526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.26e-01 94.4% 92.9%
3964027 2485.1.1.37 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 0.66 47.0 3.63e-01 75.9% 73.6%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.66 48.0 4.72e-01 79.6% 75.0%
4988225 4187.1.1.2 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL 0.66 56.0 4.24e-01 100.0% 40.0%
4623707 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.65 50.0 4.25e-01 87.0% 87.4%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.64 50.0 4.33e-01 88.9% 88.9%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.64 46.0 4.85e-01 85.2% 95.6%
4383356 3615.1.1.49 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Dynamin_N 0.64 56.0 3.19e-01 100.0% 8.6%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.63 45.0 4.73e-01 85.2% 95.6%
4959407 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.63 46.0 4.78e-01 85.2% 86.0%
5045395 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.63 52.0 4.30e-01 100.0% 96.3%
3789849 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 55.0 5.32e-01 100.0% 91.7%
3988557 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.61 46.0 3.05e-01 87.0% 29.3%
4557537 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.61 51.0 4.45e-01 100.0% 92.2%
3704667 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.60 48.0 3.02e-01 92.6% 47.5%
4394562 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 44.0 2.61e-01 81.5% 40.4%
3603549 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.49e-01 92.6% 75.6%
3630069 223.1.1.101 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.60 43.0 2.49e-01 79.6% 61.7%
4955607 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.60 43.0 2.94e-01 79.6% 88.4%
1096061 3375.1.1.1 beta barrels › Single-stranded DNA-binding protein DdrB › Single-stranded DNA-binding protein DdrB › Single-stranded DNA-binding protein DdrB › DdrB 0.60 52.0 3.95e-01 100.0% 47.7%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.60 43.0 4.52e-01 85.2% 97.8%
5046788 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 53.0 4.10e-01 100.0% 45.0%
3927505 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.59 46.0 4.22e-01 92.6% 96.2%
3798336 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.59 44.0 4.15e-01 85.2% 95.7%
3783481 11.1.1.642 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.58 48.0 3.88e-01 100.0% 66.7%
2982157 223.1.1.1 a+b three layers › Profilin-like › sensor domains › sensor domains › PHY 0.58 40.0 2.78e-01 70.4% 20.6%
3820823 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.58 46.0 3.14e-01 100.0% 52.5%
4089566 3857.1.1.1 beta sandwiches › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head_binding 0.58 51.0 4.23e-01 100.0% 81.1%
3266199 213.1.1.19 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FR47 0.57 46.0 3.39e-01 96.3% 36.0%
5075402 210.1.3.3 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.57 47.0 3.09e-01 100.0% 34.7%
3646564 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.56 47.0 2.76e-01 100.0% 20.4%
3333061 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.56 47.0 2.71e-01 100.0% 20.2%
3320228 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.56 47.0 2.72e-01 100.0% 20.2%
3479367 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.55 43.0 4.23e-01 100.0% 82.8%
4443054 3115.1.1.9 a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ 0.55 41.0 3.33e-01 87.0% 93.3%
3555970 12.5.1.1 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.54 42.0 2.97e-01 85.2% 37.6%
3508713 382.1.1.25 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.54 41.0 3.31e-01 87.0% 93.3%
3618241 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 42.0 3.51e-01 96.3% 96.2%
4250969 4081.1.1.12 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 0.51 38.0 2.59e-01 85.2% 20.4%
4271892 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.51 37.0 3.06e-01 87.0% 82.4%
3548144 2485.1.1.69 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › DUF4174 0.51 46.0 3.28e-01 100.0% 67.3%
4978421 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.51 43.0 3.39e-01 100.0% 69.2%
3879988 4081.1.1.2 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.50 42.0 2.97e-01 100.0% 77.7%