←Back to structures

KF929199.1__AHG24010.1__SEP9_089__00094

Bact-Vir

KF929199.1__AHG24010.1__SEP9_089__00094

Identity

Accession:
KF929199 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sextaecvirus› Staphylococcus_phage_vB_SepS_SEP9

TaxID: 1434319

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-70
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tkeA03 3.30.54.20 Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › 0.66 43.0 4.62e-01 97.1% 79.3%
3ccfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 52.0 3.57e-01 100.0% 27.3%
2axyA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 43.0 4.25e-01 100.0% 75.0%
8adnN01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 45.0 3.40e-01 89.9% 83.8%
1q5qH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 43.0 3.10e-01 85.5% 80.4%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.85e-01 97.1% 68.9%
2jzxA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.56 43.0 4.17e-01 100.0% 72.2%
4gczB03 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 42.0 3.27e-01 82.6% 96.3%
2a5yC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.33e-01 92.8% 45.0%
5jgjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 45.0 3.18e-01 100.0% 28.5%
2i00C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 37.0 2.96e-01 73.9% 74.3%
7fsfA02 3.30.56.80 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.53 35.0 3.59e-01 88.4% 69.6%
8dqoB02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 46.0 3.22e-01 100.0% 84.5%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 41.0 3.33e-01 87.0% 89.9%
7cboA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.51 42.0 3.71e-01 95.7% 97.2%
3d36B01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 39.0 3.07e-01 85.5% 93.8%
2gjxA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.51 41.0 3.51e-01 95.7% 92.2%
4q20A02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 36.0 2.96e-01 78.3% 99.3%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.51 41.0 3.70e-01 94.2% 67.3%
1vigA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 37.0 3.67e-01 100.0% 76.1%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 42.0 2.95e-01 100.0% 98.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3725835 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.64 54.0 3.56e-01 100.0% 22.9%
4991480 103.1.1.144 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF6955 0.64 41.0 3.64e-01 100.0% 43.8%
5047466 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.63 44.0 4.14e-01 100.0% 58.8%
3245798 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 53.0 2.88e-01 97.1% 45.0%
3416159 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.62 56.0 3.67e-01 100.0% 24.6%
3973861 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 49.0 3.40e-01 100.0% 25.1%
3931736 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 42.0 4.40e-01 100.0% 76.9%
4013239 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.61 51.0 3.66e-01 100.0% 31.7%
3985754 101.1.2.187 ↗ alpha arrays › HTH › HTH › winged helix domain › Rep3_C 0.60 52.0 4.62e-01 98.6% 70.0%
4951454 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.60 50.0 3.39e-01 100.0% 24.5%
3216905 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.54e-01 89.9% 81.3%
3993032 101.1.2.186 ↗ alpha arrays › HTH › HTH › winged helix domain › ASH2L-like_WH 0.58 49.0 4.15e-01 98.6% 58.3%
3212727 2498.2.1.4 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glycohydro_20b2 0.58 48.0 3.86e-01 95.7% 83.4%
3217245 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 4.23e-01 88.4% 77.3%
3733889 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.57 47.0 3.17e-01 100.0% 23.6%
4021820 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.56 48.0 3.25e-01 100.0% 24.3%
1624667 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 47.0 3.32e-01 100.0% 72.2%
3218558 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 4.00e-01 92.8% 61.1%
3518903 101.1.2.416 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.56 44.0 4.09e-01 89.9% 68.9%
3797376 101.1.2.589 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7516 0.55 44.0 3.72e-01 91.3% 51.2%
3272807 2498.2.1.4 ↗ mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glycohydro_20b2 0.55 46.0 3.77e-01 95.7% 85.9%
3942509 304.4.1.3 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.55 37.0 3.42e-01 72.5% 56.8%
3707832 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 3.98e-01 92.8% 71.0%
4159704 7582.1.1.2 ↗ a/b three-layered sandwiches › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › Rossmann-like domain in CbiD › PF29030 0.54 44.0 3.38e-01 94.2% 61.8%
4113191 101.1.2.387 ↗ alpha arrays › HTH › HTH › winged helix domain › FRQ 0.54 44.0 3.96e-01 97.1% 62.7%
3741091 101.1.2.69 ↗ alpha arrays › HTH › HTH › winged helix domain › La 0.54 42.0 3.84e-01 94.2% 63.2%
3492262 327.19.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › Mlh1_C 0.54 45.0 4.07e-01 98.6% 80.0%
3658915 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 43.0 3.90e-01 100.0% 64.2%
1176015 213.1.1.29 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 0.53 37.0 2.94e-01 73.9% 72.8%
3998011 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.53 36.0 2.88e-01 72.5% 66.5%
3499201 101.1.2.416 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Egal 0.53 43.0 3.65e-01 92.8% 64.2%
4302934 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.53 42.0 3.17e-01 92.8% 83.1%
5043372 3016.1.1.1 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.52 41.0 3.90e-01 92.8% 84.3%
3961486 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.52 36.0 2.75e-01 73.9% 50.3%
3479088 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.51 40.0 2.94e-01 91.3% 68.6%
3930645 101.1.2.69 ↗ alpha arrays › HTH › HTH › winged helix domain › La 0.51 43.0 3.94e-01 98.6% 81.1%
4953585 3501.1.1.0 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.50 35.0 3.42e-01 95.7% 66.7%
4025053 101.1.2.166 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.50 40.0 3.66e-01 91.3% 80.0%
D2 high residues 76-133
PDB
Domain cluster: rep: OR354836.1__WNM53664.1__CoNPh13_CDS0194__00191__D2-55