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KF977490.1__AHJ10688.1__P106B_05__00005

Bact-Vir

KF977490.1__AHJ10688.1__P106B_05__00005

Identity

Accession:
KF977490 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rigallicvirus› Rhizobium_phage_vB_RglS_P106B

TaxID: 1458697

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jrmA00 1.10.10.620 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain 0.75 56.0 5.50e-01 80.4% 85.0%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.62 43.0 3.79e-01 71.4% 96.3%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.60 45.0 3.75e-01 83.9% 66.7%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.58 43.0 3.88e-01 78.6% 81.3%
4ag6A02 1.10.8.730 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 46.0 3.91e-01 100.0% 82.7%
1mg7A01 3.30.70.1000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like 0.57 40.0 2.82e-01 73.2% 25.7%
6qwvH02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.56 45.0 4.54e-01 91.1% 100.0%
2xubA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.32e-01 92.9% 91.0%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 39.0 3.48e-01 73.2% 81.0%
1jhdA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 46.0 3.25e-01 100.0% 78.8%
2rq1A00 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.54 41.0 3.33e-01 82.1% 74.3%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.52 36.0 2.96e-01 76.8% 48.8%
1r71A02 6.10.250.140 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.50 39.0 3.91e-01 85.7% 94.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3319076 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.76 43.0 3.66e-01 96.4% 35.6%
4986820 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.67 48.0 3.06e-01 76.8% 88.7%
3926027 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.65 55.0 4.15e-01 98.2% 49.7%
3662240 601.1.1.70 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › ROH1-like 0.64 45.0 3.40e-01 73.2% 50.8%
4971808 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.63 54.0 3.45e-01 100.0% 54.2%
4629874 6130.1.1.1 ↗ alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.61 40.0 3.59e-01 100.0% 48.8%
3579677 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.60 51.0 3.24e-01 100.0% 55.4%
4964800 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.58 43.0 3.61e-01 82.1% 83.8%
4962469 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.58 45.0 3.32e-01 87.5% 56.9%
3988190 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.58 48.0 3.11e-01 100.0% 51.3%
3318885 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.58 45.0 4.11e-01 98.2% 61.1%
5056411 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.57 50.0 3.89e-01 100.0% 46.4%
4965761 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.56 41.0 3.37e-01 82.1% 76.5%
3262522 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 44.0 2.71e-01 92.9% 17.2%
3232602 197.1.1.3 ↗ alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.54 41.0 3.54e-01 82.1% 77.8%
4987087 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 45.0 3.00e-01 100.0% 74.7%
3203026 3640.1.1.8 ↗ alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Tri-helical 0.53 41.0 3.65e-01 92.9% 94.7%
3938092 3911.1.1.0 ↗ extended segments › Exosome complex protein LRP1 › Exosome complex protein LRP1 › Exosome complex protein LRP1 0.53 42.0 3.42e-01 87.5% 84.5%
148583 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.53 39.0 3.17e-01 82.1% 44.2%
4258382 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.52 38.0 3.44e-01 80.4% 70.0%
4350863 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.51 37.0 3.40e-01 80.4% 70.0%