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KF977490.1__AHJ10698.1__P106B_15__00015

Bact-Vir

KF977490.1__AHJ10698.1__P106B_15__00015

Identity

Accession:
KF977490 ↗
Kingdom:
phage

Quality

63.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rigallicvirus› Rhizobium_phage_vB_RglS_P106B

TaxID: 1458697

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-103
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.68 55.0 5.20e-01 90.7% 87.9%
1v62A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 44.0 3.64e-01 94.4% 60.7%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.55 45.0 3.63e-01 96.3% 54.5%
1dqgA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 43.0 3.45e-01 100.0% 82.8%
3c7xA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.54 45.0 3.16e-01 100.0% 36.2%
4g1iA03 3.30.70.1770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.71e-01 81.5% 76.8%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 40.0 3.05e-01 83.3% 80.7%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.53 42.0 3.36e-01 94.4% 85.1%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.53 43.0 3.68e-01 100.0% 54.1%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 44.0 3.03e-01 100.0% 34.1%
2ju5A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.48e-01 100.0% 98.4%
2mhgA00 2.20.130.30 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 0.52 35.0 3.31e-01 98.1% 53.3%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.52 40.0 2.88e-01 85.2% 87.0%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.51 41.0 3.62e-01 100.0% 70.7%
4zm3B01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 39.0 3.12e-01 100.0% 62.0%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3337373 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.69 43.0 2.95e-01 74.1% 17.8%
5079258 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.69 50.0 5.36e-01 90.7% 93.3%
2442362 1021.1.1.2 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.60 44.0 4.22e-01 94.4% 68.3%
4579024 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.60 47.0 4.64e-01 98.1% 82.8%
4002608 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.60 43.0 2.78e-01 75.9% 37.1%
3214098 330.1.1.24 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.59 50.0 4.03e-01 100.0% 51.3%
3800723 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.58 44.0 2.91e-01 85.2% 47.7%
4027533 247.1.1.11 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2 0.55 37.0 2.30e-01 70.4% 12.3%
4263275 330.1.1.3 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.54 46.0 3.83e-01 98.1% 67.0%
3670605 330.1.1.3 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.54 46.0 3.93e-01 98.1% 74.4%
4930179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.79e-01 100.0% 74.5%
3268750 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.52 33.0 2.38e-01 74.1% 20.0%
5003057 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.52 41.0 3.84e-01 88.9% 81.4%
4976401 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.52 42.0 3.09e-01 94.4% 62.6%
3626832 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.51 37.0 2.25e-01 81.5% 19.1%
4047302 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.51 33.0 2.71e-01 94.4% 35.0%
4660203 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.50 31.0 2.48e-01 74.1% 24.0%
4669519 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.50 38.0 2.96e-01 85.2% 80.0%