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KF977490.1__AHJ10747.1__P106B_64__00064

Bact-Vir

KF977490.1__AHJ10747.1__P106B_64__00064

Identity

Accession:
KF977490 ↗
Kingdom:
phage

Quality

69.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rigallicvirus› Rhizobium_phage_vB_RglS_P106B

TaxID: 1458697

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-58
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.68 52.0 5.18e-01 94.3% 80.7%
1ao0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.65 44.0 2.76e-01 71.7% 44.0%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.65 55.0 4.83e-01 100.0% 88.1%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.64 46.0 2.75e-01 77.4% 11.2%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.64 55.0 4.88e-01 100.0% 88.9%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 43.0 2.77e-01 73.6% 20.0%
2arzA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.62 46.0 3.95e-01 81.1% 85.2%
3mxnB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 43.0 3.23e-01 73.6% 56.5%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.66e-01 86.8% 79.4%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.61 41.0 3.53e-01 73.6% 44.0%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.59 45.0 3.74e-01 84.9% 57.1%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.68e-01 75.5% 63.5%
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.57 39.0 3.33e-01 73.6% 67.7%
4oxiA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.57 41.0 2.41e-01 73.6% 11.7%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 42.0 3.34e-01 84.9% 44.7%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.57 43.0 4.09e-01 84.9% 93.8%
7d27A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.56 46.0 3.15e-01 100.0% 29.1%
3lnbA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.56 43.0 2.86e-01 90.6% 84.9%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.12e-01 73.6% 76.6%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.18e-01 73.6% 66.7%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 2.80e-01 75.5% 95.0%
4zn0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.30e-01 98.1% 88.1%
1jiwI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 3.33e-01 83.0% 91.4%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 37.0 2.99e-01 71.7% 38.9%
7pluA01 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 40.0 3.20e-01 81.1% 56.6%
2gwcA00 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.53 43.0 2.54e-01 90.6% 19.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.53 41.0 4.05e-01 90.6% 96.7%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 42.0 3.06e-01 100.0% 30.7%
2d4aA02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.53 37.0 2.67e-01 84.9% 25.0%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 37.0 3.64e-01 75.5% 79.3%
4byfC02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 41.0 3.03e-01 92.5% 67.7%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.51 41.0 3.55e-01 96.2% 79.6%
6ui4A02 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.25e-01 100.0% 71.0%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 36.0 2.82e-01 77.4% 34.8%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 34.0 2.81e-01 73.6% 44.1%
4iwxA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 36.0 3.09e-01 84.9% 73.9%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 36.0 3.45e-01 77.4% 91.9%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.50 38.0 3.66e-01 92.5% 87.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 40.0 3.84e-01 92.5% 81.2%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3285183 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.64 49.0 3.14e-01 84.9% 79.6%
3387014 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.63 42.0 4.15e-01 73.6% 65.5%
4947558 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 44.0 3.82e-01 77.4% 94.4%
4926929 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 42.0 4.16e-01 79.2% 67.3%
3527580 220.1.1.145 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP 0.62 44.0 4.36e-01 75.5% 80.0%
3286555 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 44.0 3.51e-01 75.5% 80.0%
3739717 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.62 51.0 4.51e-01 98.1% 90.6%
3878636 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.62 48.0 3.54e-01 86.8% 81.4%
3265052 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 48.0 3.20e-01 88.7% 45.5%
3183270 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 3.30e-01 73.6% 36.6%
3212555 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.61 50.0 3.85e-01 94.3% 40.8%
5039029 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 41.0 3.52e-01 71.7% 66.7%
5057445 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.60 45.0 3.93e-01 83.0% 63.5%
4475360 11.1.1.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CagX 0.60 45.0 3.46e-01 83.0% 59.2%
3988565 4.16.1.0 ↗ beta barrels › SH3 › PhtA domain-like › PhtA domain-like 0.60 38.0 4.08e-01 84.9% 77.8%
4307219 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.59 39.0 3.88e-01 71.7% 65.5%
4323154 2.1.1.341 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30208 0.59 41.0 3.23e-01 73.6% 53.9%
3966925 304.107.1.2 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › SoxG 0.59 45.0 3.24e-01 92.5% 97.9%
4963446 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.50e-01 92.5% 83.1%
3602759 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 40.0 3.91e-01 73.6% 70.0%
3219020 7516.1.1.8 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Galactosyl_T 0.57 39.0 2.44e-01 71.7% 65.9%
5044987 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 3.74e-01 92.5% 54.3%
4930469 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.57 37.0 4.01e-01 77.4% 90.0%
4989374 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.56 48.0 4.19e-01 100.0% 82.4%
5044986 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.87e-01 92.5% 63.3%
3224211 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.55 47.0 2.86e-01 98.1% 81.3%
5036621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.40e-01 90.6% 92.7%
5035483 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 43.0 3.19e-01 96.2% 32.4%
4986692 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.55 39.0 2.99e-01 79.2% 99.3%
3390227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 42.0 3.39e-01 84.9% 56.2%
3275056 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 46.0 3.16e-01 100.0% 30.4%
5044090 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 42.0 3.11e-01 88.7% 33.8%
4956526 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.54 40.0 3.13e-01 81.1% 88.3%
4373825 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.53 41.0 3.27e-01 90.6% 46.8%
3929201 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 35.0 3.61e-01 81.1% 77.6%
3930643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 38.0 3.70e-01 81.1% 91.7%
4441925 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 40.0 2.96e-01 86.8% 85.5%
3604204 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 2.97e-01 96.2% 95.0%
4077309 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.51 40.0 3.55e-01 88.7% 58.7%
5009771 2.21.1.5 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › PF27234 0.50 39.0 2.82e-01 88.7% 92.9%