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KF977490.1__AHJ10777.1__P106B_94__00094

Bact-Vir

KF977490.1__AHJ10777.1__P106B_94__00094

Identity

Accession:
KF977490 ↗
Kingdom:
phage

Quality

64.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-44
PDB
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.74 61.0 5.89e-01 100.0% 88.0%
5zneA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 62.0 5.24e-01 100.0% 97.3%
1hskA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.69 61.0 4.28e-01 100.0% 33.1%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.69 47.0 4.21e-01 100.0% 48.5%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 50.0 3.32e-01 100.0% 19.2%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 48.0 3.51e-01 100.0% 28.0%
1mw7A02 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.65 51.0 4.27e-01 95.3% 50.6%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.65 45.0 4.16e-01 100.0% 54.1%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 54.0 3.58e-01 100.0% 27.7%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.63 52.0 4.26e-01 97.7% 72.4%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.63 55.0 4.61e-01 100.0% 59.2%
4limA00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.63 49.0 2.94e-01 100.0% 10.8%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 50.0 4.11e-01 100.0% 55.2%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 48.0 3.87e-01 100.0% 53.2%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.62 50.0 4.11e-01 90.7% 94.9%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 55.0 4.02e-01 100.0% 41.2%
1vw4601 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 51.0 4.05e-01 100.0% 57.1%
6eo5B01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 55.0 3.39e-01 100.0% 17.6%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 51.0 4.30e-01 100.0% 53.8%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.61 50.0 3.37e-01 100.0% 96.9%
1zr6A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.61 53.0 3.65e-01 100.0% 29.8%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.61 49.0 2.94e-01 100.0% 83.0%
2bs2B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.61 47.0 3.80e-01 97.7% 80.2%
4iauA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.60 43.0 3.67e-01 100.0% 43.6%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 51.0 3.46e-01 100.0% 26.2%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 3.93e-01 100.0% 47.1%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 47.0 3.77e-01 100.0% 89.1%
2lrwA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 47.0 4.10e-01 100.0% 82.1%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 48.0 3.31e-01 100.0% 26.5%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 3.77e-01 100.0% 43.2%
4bpuC00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.58 45.0 2.72e-01 100.0% 11.2%
2wyqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 46.0 4.02e-01 100.0% 77.9%
3liuA01 2.60.40.3160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.63e-01 100.0% 38.1%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 47.0 4.22e-01 95.3% 89.1%
7ct1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 46.0 3.93e-01 100.0% 75.3%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 43.0 3.35e-01 83.7% 34.3%
2jx5A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.58 45.0 4.12e-01 100.0% 76.8%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.58 46.0 3.51e-01 97.7% 77.5%
3szpB02 3.40.190.290 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.58 45.0 3.00e-01 93.0% 33.7%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 46.0 4.34e-01 95.3% 100.0%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 43.0 3.28e-01 100.0% 34.5%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 45.0 3.97e-01 95.3% 79.2%
3p1mA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.57 46.0 3.46e-01 100.0% 76.2%
2kgfA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.56 38.0 2.83e-01 74.4% 64.3%
2dlgA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.85e-01 97.7% 57.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 43.0 3.12e-01 100.0% 46.7%
1wdiA02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.55 45.0 3.89e-01 97.7% 98.6%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.25e-01 100.0% 40.1%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.31e-01 100.0% 40.1%
2mlbA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 44.0 3.78e-01 100.0% 77.2%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.13e-01 100.0% 65.2%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 3.08e-01 95.3% 31.8%
4ccjA01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.53 40.0 2.63e-01 95.3% 17.5%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 42.0 3.53e-01 97.7% 55.8%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.52 38.0 3.36e-01 100.0% 55.4%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.52 35.0 3.12e-01 90.7% 41.6%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 3.28e-01 100.0% 41.4%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 43.0 2.65e-01 95.3% 81.8%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 44.0 3.34e-01 100.0% 52.9%
2pw9C02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 37.0 3.58e-01 97.7% 87.9%
2d93A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 40.0 2.99e-01 100.0% 32.1%
1mbyA00 2.40.50.930 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 32.0 2.76e-01 74.4% 37.3%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.99 91.0 8.57e-01 100.0% 84.0%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.92 79.0 7.83e-01 100.0% 91.1%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.92 79.0 7.81e-01 100.0% 91.1%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.91 81.0 8.03e-01 97.7% 93.3%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.89 76.0 7.53e-01 100.0% 91.1%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.89 75.0 7.17e-01 100.0% 82.0%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.88 75.0 7.18e-01 100.0% 82.0%
5015713 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.81 70.0 6.32e-01 100.0% 95.0%
4009311 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.79 68.0 6.01e-01 100.0% 67.7%
3942988 4187.2.1.1 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.77 66.0 5.83e-01 100.0% 66.2%
3287357 3115.3.1.0 a+b two layers › GP2-like › P56 › P56 0.77 67.0 6.10e-01 100.0% 88.1%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.77 67.0 6.45e-01 100.0% 88.0%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.71 61.0 4.83e-01 100.0% 54.4%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.71 59.0 5.74e-01 100.0% 92.0%
1844216 4007.1.1.1 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.69 57.0 5.48e-01 97.7% 86.3%
3959955 304.163.1.3 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 0.69 60.0 5.96e-01 100.0% 93.3%
3289401 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.68 56.0 4.11e-01 100.0% 36.2%
3573883 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.67 55.0 4.11e-01 100.0% 46.4%
3991455 822.2.1.1 a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.66 50.0 4.73e-01 93.0% 69.1%
5747 4007.1.1.1 a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg 0.65 51.0 4.90e-01 95.3% 81.5%
3899253 3957.1.1.0 a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 0.64 45.0 4.45e-01 76.7% 91.1%
3783481 11.1.1.642 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.63 52.0 3.88e-01 100.0% 53.3%
3588001 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.62 52.0 3.61e-01 100.0% 34.8%
4083103 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 48.0 3.67e-01 100.0% 42.4%
4970434 217.1.1.2 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.61 54.0 4.23e-01 100.0% 52.2%
3969773 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.61 48.0 3.74e-01 93.0% 63.8%
4961379 4176.1.1.2 a/b three-layered sandwiches › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › a/b domain in CV3147-like proteins › S-Me-THD_N 0.59 45.0 3.05e-01 100.0% 20.9%
3980267 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.59 48.0 3.67e-01 95.3% 64.8%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.59 47.0 4.37e-01 97.7% 75.0%
3211869 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 49.0 3.96e-01 100.0% 70.0%
4418109 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 45.0 3.35e-01 100.0% 37.8%
3250477 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 41.0 3.14e-01 86.0% 31.1%
3502540 1.1.1.14 beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.55 44.0 3.63e-01 97.7% 78.9%
3827332 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.55 42.0 3.79e-01 100.0% 82.7%
3624854 376.1.2.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.55 42.0 3.37e-01 100.0% 40.0%
3630069 223.1.1.101 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.54 39.0 2.26e-01 81.4% 77.5%
3999000 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.54 43.0 3.66e-01 100.0% 76.5%
3200355 72.1.1.0 beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like 0.54 42.0 3.50e-01 100.0% 45.6%
1806520 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.53 43.0 3.43e-01 100.0% 98.1%
3723066 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.52 43.0 2.85e-01 100.0% 29.0%
4089566 3857.1.1.1 beta sandwiches › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head_binding 0.51 41.0 3.36e-01 100.0% 46.3%
5040885 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.13e-01 100.0% 46.1%
3598592 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.51 41.0 3.01e-01 100.0% 32.1%