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KJ002054.2__AHJ10552.1__Spp001_44__00044

Bact-Vir

KJ002054.2__AHJ10552.1__Spp001_44__00044

Identity

Accession:
KJ002054 ↗
Kingdom:
phage

Quality

86.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-60
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h1tA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.66 57.0 4.44e-01 100.0% 89.1%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 48.0 3.98e-01 83.3% 43.5%
4ka7A01 1.10.1370.40 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.65 57.0 3.46e-01 100.0% 53.8%
6brdA03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.64 51.0 4.43e-01 100.0% 56.8%
3ot2A00 3.90.1570.10 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › tt1808, chain A 0.62 55.0 3.93e-01 100.0% 70.4%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 43.0 3.43e-01 81.7% 35.2%
4k2xA03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.62 52.0 4.39e-01 100.0% 58.9%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.62 53.0 3.93e-01 100.0% 82.8%
2b7jB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 52.0 3.88e-01 100.0% 71.3%
3ijmA00 3.90.1570.20 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.61 53.0 4.03e-01 100.0% 75.3%
2i9uA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.61 43.0 3.54e-01 76.7% 40.5%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 50.0 4.02e-01 95.0% 89.6%
2r0cA03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.60 51.0 4.22e-01 100.0% 56.9%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 49.0 3.89e-01 100.0% 80.3%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 50.0 3.92e-01 100.0% 77.1%
1t4lB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 49.0 4.45e-01 100.0% 82.2%
5fhiA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 50.0 4.71e-01 100.0% 84.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 38.0 3.75e-01 73.3% 59.7%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 47.0 3.80e-01 88.3% 90.6%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 39.0 3.83e-01 76.7% 62.1%
4mdcD01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 49.0 4.13e-01 100.0% 58.2%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 41.0 3.15e-01 78.3% 50.9%
3cu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 3.41e-01 90.0% 72.2%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.56 47.0 3.87e-01 95.0% 69.0%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.56 41.0 3.36e-01 81.7% 40.8%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 49.0 4.32e-01 100.0% 65.9%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 42.0 3.48e-01 85.0% 43.8%
1rznA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.56 46.0 3.62e-01 100.0% 96.0%
4js8A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 41.0 3.65e-01 80.0% 87.6%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 37.0 3.68e-01 78.3% 66.7%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.54 39.0 3.34e-01 81.7% 59.3%
1bwzA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 40.0 3.31e-01 86.7% 92.1%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.54 40.0 3.31e-01 81.7% 88.6%
2w3sB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.54 42.0 3.01e-01 90.0% 85.0%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 39.0 2.73e-01 93.3% 22.9%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.48e-01 86.7% 59.3%
2rqbA00 2.170.150.30 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain 0.53 40.0 3.17e-01 85.0% 40.7%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 30.0 2.49e-01 90.0% 26.7%
2kz0A01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.52 41.0 3.89e-01 88.3% 73.2%
3kd4A02 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.52 36.0 2.78e-01 76.7% 42.5%
1io1A02 2.170.280.10 Mainly Beta › Beta Complex › f41 fragment of flagellin, middle domain › f41 fragment of flagellin, middle domain 0.51 41.0 3.35e-01 95.0% 61.8%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.26e-01 81.7% 49.0%
2d7vB00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.51 37.0 2.93e-01 83.3% 43.1%
3lrtB01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.31e-01 100.0% 93.5%
1k3xA01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.51 43.0 3.48e-01 98.3% 64.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3693539 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.73 56.0 3.96e-01 83.3% 72.8%
3722204 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.70 55.0 4.08e-01 85.0% 74.0%
5046617 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 58.0 4.03e-01 90.0% 85.8%
4014792 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.70 53.0 4.60e-01 83.3% 58.9%
3396736 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.69 51.0 5.03e-01 80.0% 81.5%
4958442 2008.1.1.51 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › McrBC 0.68 60.0 4.33e-01 100.0% 89.9%
1240179 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.67 49.0 4.77e-01 80.0% 76.5%
4256769 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.66 49.0 4.17e-01 80.0% 52.0%
3558010 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 49.0 3.86e-01 83.3% 39.2%
3729598 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.65 48.0 4.82e-01 83.3% 80.0%
3685086 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.65 58.0 4.26e-01 100.0% 70.3%
3250206 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.64 47.0 4.43e-01 80.0% 78.7%
3697259 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.64 47.0 4.88e-01 81.7% 87.3%
3502952 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.64 55.0 4.75e-01 100.0% 80.0%
3827180 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.64 48.0 3.58e-01 83.3% 35.8%
4014945 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.63 48.0 4.61e-01 83.3% 81.4%
3733455 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.63 47.0 3.99e-01 81.7% 57.1%
4998161 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 53.0 4.06e-01 100.0% 92.9%
3183857 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.63 47.0 3.91e-01 81.7% 56.4%
5023921 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.63 44.0 4.53e-01 75.0% 80.0%
140944 2008.1.1.20 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.62 55.0 3.93e-01 100.0% 70.4%
3952449 2008.1.1.114 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.62 51.0 4.27e-01 93.3% 91.8%
3174350 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 50.0 4.97e-01 93.3% 100.0%
4943984 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 52.0 3.78e-01 98.3% 83.2%
5049500 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 53.0 4.02e-01 100.0% 93.3%
4888970 316.1.1.58 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4, Nrap_D5 0.62 45.0 3.12e-01 78.3% 22.6%
1117795 316.1.1.25 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 0.61 45.0 3.12e-01 78.3% 23.2%
3322023 64.1.1.8 beta meanders › WW domain-like › WW domain › WW domain › DUF7028 0.61 46.0 4.70e-01 100.0% 92.7%
5028573 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 51.0 3.95e-01 96.7% 93.6%
3964887 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 50.0 3.97e-01 96.7% 96.3%
None 0.60 51.0 3.20e-01 100.0% 23.7%
3175516 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.60 44.0 3.71e-01 78.3% 67.0%
3959053 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 44.0 3.18e-01 81.7% 57.3%
3670347 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.59 42.0 3.95e-01 100.0% 59.5%
3256547 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 37.0 3.20e-01 81.7% 39.0%
3248518 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.57 46.0 3.76e-01 93.3% 74.0%
3931669 304.4.1.54 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.57 43.0 3.29e-01 83.3% 40.7%
3945875 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 45.0 3.47e-01 88.3% 76.4%
3577106 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.56 43.0 3.50e-01 83.3% 83.5%
4053705 3504.2.1.1 beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.56 48.0 3.77e-01 100.0% 76.3%
4073493 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.56 47.0 2.79e-01 98.3% 16.2%
3464534 101.1.2.641 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.55 43.0 2.51e-01 85.0% 33.0%
5059099 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.55 46.0 4.18e-01 100.0% 90.9%
4024350 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 34.0 2.60e-01 90.0% 26.4%
4009818 3268.1.1.1 a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI 0.55 38.0 3.28e-01 75.0% 44.0%
3614118 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 45.0 2.66e-01 95.0% 15.6%
4964370 2008.1.1.230 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7527 0.55 43.0 2.96e-01 90.0% 66.0%
3953503 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.55 45.0 2.84e-01 100.0% 20.5%
5062306 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 40.0 3.66e-01 85.0% 98.9%
3949829 2004.1.1.478 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15, AAA_21 0.54 45.0 2.91e-01 100.0% 24.6%
3208479 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 45.0 3.42e-01 100.0% 57.1%
4483079 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.54 45.0 2.83e-01 100.0% 22.1%
5013525 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 44.0 3.58e-01 96.7% 89.6%
3702718 2003.1.2.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.53 44.0 3.03e-01 93.3% 63.3%
3199204 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 41.0 3.51e-01 90.0% 83.8%
3499577 3246.1.1.5 few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › ADAM10_Cys-rich 0.52 40.0 3.55e-01 90.0% 61.1%
3753697 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.93e-01 83.3% 88.3%
4012140 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 41.0 2.42e-01 96.7% 32.3%
4372260 3468.1.1.1 a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.51 40.0 3.14e-01 88.3% 77.1%
3399725 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.51 39.0 3.28e-01 86.7% 45.2%
3585813 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.51 38.0 3.77e-01 83.3% 81.5%
4333172 2484.1.1.20 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.51 37.0 2.63e-01 93.3% 24.0%
5038805 2484.1.1.68 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H_2 0.50 38.0 2.77e-01 86.7% 44.4%