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KJ018209.1__AHK11209.1__S14_100__00097

Bact-Vir

KJ018209.1__AHK11209.1__S14_100__00097

Identity

Accession:
KJ018209 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_sp._phage_1/4

TaxID: 1458859

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-105
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 55.0 6.27e-01 80.7% 100.0%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.77 62.0 5.70e-01 85.2% 86.4%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 47.0 4.61e-01 71.6% 93.8%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 49.0 4.25e-01 77.3% 70.5%
3r8eA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 49.0 4.17e-01 76.1% 71.4%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.67 53.0 4.79e-01 85.2% 86.8%
2yhwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 48.0 4.06e-01 77.3% 71.7%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 46.0 4.42e-01 77.3% 94.3%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.63 41.0 4.60e-01 89.8% 87.9%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 55.0 3.46e-01 96.6% 49.1%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 46.0 4.39e-01 77.3% 93.2%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 45.0 4.23e-01 77.3% 92.8%
1c9rA04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.62 43.0 4.09e-01 72.7% 85.0%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 54.0 3.61e-01 96.6% 61.9%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.61 55.0 3.79e-01 100.0% 82.3%
3vglA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 44.0 3.88e-01 77.3% 69.1%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.60 44.0 3.96e-01 78.4% 76.6%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 55.0 4.90e-01 100.0% 87.8%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 46.0 4.13e-01 84.1% 77.3%
5xyig01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 53.0 3.64e-01 100.0% 62.3%
1wlgA02 2.60.98.20 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE 0.58 50.0 4.30e-01 95.5% 92.1%
3ebkB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 43.0 3.54e-01 80.7% 85.4%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.57 46.0 3.91e-01 88.6% 94.6%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.56 41.0 3.53e-01 77.3% 66.2%
2f9wA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 39.0 3.45e-01 72.7% 56.5%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 48.0 4.11e-01 100.0% 94.7%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 41.0 3.32e-01 88.6% 40.7%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.54 45.0 3.68e-01 93.2% 60.2%
3ltiA01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.53 45.0 3.74e-01 96.6% 86.1%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 45.0 4.08e-01 93.2% 71.4%
8gzhC01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.53 46.0 3.73e-01 100.0% 81.8%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.85e-01 92.0% 82.7%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.65e-01 83.0% 81.4%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.51 35.0 3.35e-01 71.6% 79.8%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 38.0 2.65e-01 81.8% 23.2%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977273 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.68 48.0 4.10e-01 72.7% 70.0%
4380331 295.1.1.27 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.68 46.0 5.06e-01 70.5% 95.7%
3352391 2484.1.1.103 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N 0.66 48.0 4.26e-01 77.3% 66.2%
5049624 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.66 49.0 4.84e-01 79.5% 85.3%
1149912 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.65 47.0 4.27e-01 77.3% 84.6%
4220848 2484.1.1.103 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Tab2-like_N 0.65 48.0 3.53e-01 78.4% 37.0%
3242741 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 45.0 3.19e-01 96.6% 24.3%
3240229 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.64 46.0 3.26e-01 100.0% 24.4%
4025256 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 44.0 4.60e-01 73.9% 95.0%
4344652 7503.1.1.0 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain 0.63 47.0 4.30e-01 79.5% 85.2%
4116094 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.63 43.0 3.93e-01 70.5% 66.1%
1187920 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 43.0 4.66e-01 71.6% 92.8%
5053501 2484.1.1.21 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.62 45.0 3.21e-01 78.4% 96.9%
5060242 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 44.0 4.24e-01 77.3% 98.0%
4284005 868.1.1.3 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.59 43.0 3.42e-01 77.3% 91.6%
3251994 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 45.0 3.98e-01 81.8% 57.4%
4285345 4099.1.1.20 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 0.59 46.0 4.18e-01 85.2% 69.2%
3236101 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.57 36.0 3.46e-01 85.2% 55.0%
3592181 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.57 49.0 4.34e-01 96.6% 84.4%
3914858 5.1.4.281 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Hyd_WA, Tectonin 0.57 50.0 3.47e-01 98.9% 56.2%
3996732 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 51.0 3.52e-01 98.9% 60.7%
4027965 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 48.0 3.26e-01 92.0% 48.5%
4963032 244.2.1.15 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › TSCPD 0.57 44.0 4.19e-01 86.4% 80.9%
3520126 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.56 48.0 3.24e-01 96.6% 51.7%
3856864 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.56 42.0 3.63e-01 80.7% 55.2%
3940470 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.56 49.0 3.23e-01 100.0% 95.9%
4212114 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.55 48.0 3.90e-01 97.7% 81.7%
3626003 216.1.1.17 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C 0.55 43.0 4.03e-01 86.4% 80.0%
3851509 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.55 48.0 3.02e-01 100.0% 96.8%
3611339 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 46.0 4.70e-01 100.0% 96.5%
3613171 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 47.0 3.67e-01 96.6% 94.2%
3506427 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 41.0 3.65e-01 81.8% 90.4%
3597338 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 47.0 3.58e-01 100.0% 70.2%
3587198 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.52 36.0 3.12e-01 70.5% 71.4%
4463869 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.52 44.0 3.56e-01 96.6% 83.8%
3281348 4221.1.1.0 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like 0.51 44.0 4.29e-01 98.9% 89.0%
3221670 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.50 35.0 3.42e-01 86.4% 65.0%