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KJ018209.1__AHK11240.1__S14_131__00128

Bact-Vir

KJ018209.1__AHK11240.1__S14_131__00128

Identity

Accession:
KJ018209 ↗
Kingdom:
phage

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-117
PDB
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.63 42.0 4.21e-01 82.0% 64.9%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 43.0 4.36e-01 84.7% 72.2%
5g0aA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.57 41.0 3.07e-01 74.8% 81.7%
1a7gE00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 36.0 4.09e-01 71.2% 86.6%
6jixA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.56 40.0 3.06e-01 74.8% 81.5%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 3.94e-01 82.9% 80.9%
1xppD00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.56 36.0 3.81e-01 73.9% 73.3%
4a8xA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 34.0 3.72e-01 80.2% 77.3%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.55 34.0 3.84e-01 75.7% 85.9%
3wx4A00 3.30.70.2770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.91e-01 70.3% 81.6%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 32.0 3.49e-01 71.2% 71.4%
1wycA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 47.0 3.76e-01 100.0% 87.5%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 4.06e-01 73.0% 89.0%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 37.0 3.29e-01 73.0% 99.4%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 32.0 3.74e-01 71.2% 92.0%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 35.0 3.63e-01 73.0% 72.2%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 3.57e-01 70.3% 75.0%
1fc4A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 38.0 3.60e-01 84.7% 64.7%
1if1B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.68e-01 73.9% 94.2%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 34.0 3.64e-01 70.3% 79.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947416 101.1.9.88 alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha 0.74 58.0 5.89e-01 82.9% 86.4%
3978692 101.1.9.143 alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.68 60.0 5.46e-01 96.4% 75.3%
5030783 242.1.1.3 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end 0.61 38.0 4.12e-01 79.3% 73.7%
3700237 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 42.0 4.02e-01 80.2% 64.6%
5032322 242.1.1.2 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.57 37.0 3.94e-01 78.4% 73.0%
4928462 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.56 43.0 4.46e-01 95.5% 88.6%
4819807 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.56 36.0 4.11e-01 70.3% 92.3%
4117256 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.56 41.0 3.96e-01 95.5% 66.9%
4225218 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.55 36.0 3.53e-01 70.3% 60.0%
3714160 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.54 39.0 4.29e-01 77.5% 93.3%
4627000 213.1.1.63 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › AHL_synthase 0.53 41.0 3.07e-01 81.1% 84.9%
3394795 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 35.0 4.12e-01 71.2% 98.7%
4976773 101.1.2.275 alpha arrays › HTH › HTH › winged helix domain › DUF1495 0.52 35.0 3.56e-01 77.5% 69.1%
4004010 304.7.1.0 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.52 35.0 4.08e-01 70.3% 98.8%
3586334 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 38.0 4.12e-01 80.2% 96.7%
4025874 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 35.0 3.62e-01 70.3% 75.2%
4961841 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.51 42.0 4.06e-01 91.9% 87.7%
166322 304.4.1.14 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.51 35.0 3.65e-01 70.3% 80.4%
4098707 304.159.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.51 35.0 3.71e-01 72.1% 81.0%
3845338 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.50 32.0 3.45e-01 78.4% 74.7%
3663444 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.50 34.0 3.33e-01 82.9% 61.6%
D2 high residues 159-241
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.73e-01 78.3% 77.8%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 3.89e-01 78.3% 48.6%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 3.81e-01 78.3% 48.6%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 3.67e-01 75.9% 47.1%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.13e-01 77.1% 69.3%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.17e-01 77.1% 69.4%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 4.29e-01 74.7% 81.0%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.38e-01 77.1% 78.6%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.58e-01 75.9% 48.6%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.59e-01 80.7% 44.7%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.50e-01 77.1% 46.0%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 44.0 3.65e-01 78.3% 52.2%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.04e-01 77.1% 68.7%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.22e-01 78.3% 76.7%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 3.58e-01 77.1% 51.1%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.15e-01 78.3% 82.4%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.61e-01 78.3% 52.9%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.63e-01 78.3% 55.2%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.22e-01 80.7% 72.0%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.54e-01 78.3% 52.5%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 4.11e-01 74.7% 88.1%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.48e-01 78.3% 44.5%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.65e-01 78.3% 57.1%
1e6vB02 1.20.840.10 Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal 0.56 41.0 2.81e-01 75.9% 52.9%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.66e-01 80.7% 53.8%
2hgcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 4.25e-01 77.1% 91.0%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.43e-01 77.1% 50.4%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 4.01e-01 74.7% 77.5%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.45e-01 78.3% 52.2%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 4.04e-01 77.1% 86.4%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.79e-01 78.3% 74.1%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.51 36.0 3.83e-01 90.4% 84.5%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 32.0 3.42e-01 91.6% 71.6%
4chuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.66e-01 89.2% 60.3%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.51 34.0 3.85e-01 88.0% 100.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979355 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 4.29e-01 77.1% 67.3%
4937327 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 39.0 4.75e-01 74.7% 92.7%
4971669 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 3.84e-01 77.1% 51.7%
3960412 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 3.88e-01 77.1% 52.9%
4990274 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 46.0 4.25e-01 77.1% 70.5%
5006536 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.62 46.0 4.53e-01 77.1% 78.9%
3261727 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.62 54.0 4.80e-01 92.8% 93.9%
5023957 101.1.2.280 alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.62 46.0 4.74e-01 78.3% 88.7%
3616844 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.62 53.0 4.62e-01 92.8% 82.4%
4986510 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 46.0 3.75e-01 78.3% 50.7%
3951258 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.61 46.0 3.76e-01 79.5% 51.3%
4941357 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 4.55e-01 75.9% 81.2%
4941351 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 4.55e-01 78.3% 85.9%
4251909 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 45.0 4.53e-01 78.3% 82.4%
4944350 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 4.52e-01 79.5% 86.7%
4982733 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.35e-01 80.7% 83.3%
5012277 101.1.2.904 alpha arrays › HTH › HTH › winged helix domain › HTH_38 0.58 43.0 4.52e-01 78.3% 88.0%
4970820 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.67e-01 75.9% 96.7%
1109306 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.57 43.0 4.10e-01 81.9% 67.3%
4929096 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.57 43.0 4.09e-01 78.3% 68.4%
5031727 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.57 44.0 4.24e-01 81.9% 80.0%
4927802 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 43.0 3.40e-01 78.3% 40.6%
3821340 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.57 44.0 3.63e-01 81.9% 60.0%
4928556 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 4.09e-01 80.7% 69.4%
2725 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 4.04e-01 77.1% 86.4%
4956853 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.81e-01 84.3% 71.8%
4993521 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 39.0 3.48e-01 77.1% 99.2%
5040910 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.54 38.0 3.91e-01 74.7% 85.0%
4604112 213.1.1.8 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC 0.53 37.0 3.00e-01 71.1% 67.5%
3869516 327.11.2.56 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28453 0.52 37.0 4.03e-01 89.2% 95.4%
5036162 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.43e-01 75.9% 76.4%
4636695 304.36.1.1 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.52 33.0 3.63e-01 79.5% 80.9%
4598960 304.36.1.0 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like 0.51 34.0 3.64e-01 79.5% 81.4%
3931636 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 34.0 3.95e-01 86.7% 98.3%