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KJ018211.1__AHK11510.1__S140_103__00100

Bact-Vir

KJ018211.1__AHK11510.1__S140_103__00100

Identity

Accession:
KJ018211 ↗
Kingdom:
phage

Quality

62.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_sp._phage_1/40

TaxID: 1458860

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-89
PDB
D2 high residues 103-172
PDB
Domain cluster: rep: KX507046.1__AOQ26777.1__X__00052__D9-78
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 29.0 3.42e-01 92.9% 61.2%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.56 36.0 3.34e-01 84.3% 51.7%
1gaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 45.0 2.90e-01 92.9% 77.2%
7lgnB03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.54 45.0 3.63e-01 94.3% 99.3%
5o16B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.53 43.0 2.99e-01 92.9% 32.4%
7lvlA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 48.0 3.13e-01 100.0% 87.2%
5c54G00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 47.0 3.04e-01 100.0% 86.0%
2ksnA01 1.20.225.20 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Ub domain-containing protein, DC-UbP/UBTD2, N-terminal domain 0.51 36.0 3.50e-01 84.3% 67.9%
7pluA01 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 38.0 3.33e-01 84.3% 61.1%
3kh8A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 39.0 3.29e-01 88.6% 77.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4472564 601.25.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical 0.59 42.0 3.06e-01 74.3% 70.0%
3281671 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.58 36.0 4.09e-01 100.0% 90.0%
3961991 2007.1.6.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Shikimate_dh_N 0.55 42.0 3.69e-01 100.0% 54.3%
3259133 2003.1.1.52 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › RmlD_sub_bind 0.53 45.0 2.93e-01 95.7% 48.4%
5043100 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.52 42.0 3.10e-01 95.7% 32.5%
3734739 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 39.0 3.54e-01 100.0% 58.1%
996932 2007.1.6.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Shikimate_dh_N 0.51 38.0 3.23e-01 100.0% 46.7%
154279 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.51 39.0 2.85e-01 87.1% 89.3%
5051866 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.50 41.0 3.08e-01 95.7% 35.6%
4432257 2007.1.6.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › Shikimate_dh_N 0.50 38.0 3.37e-01 100.0% 53.6%
D3 medium residues 188-218
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.78 53.0 2.98e-01 71.0% 80.5%
3fk5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.77 52.0 3.26e-01 93.5% 14.3%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.75 58.0 3.54e-01 93.5% 14.7%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 3.67e-01 74.2% 64.2%
6bfnB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.74 63.0 3.87e-01 100.0% 80.7%
4h17A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.73 58.0 3.54e-01 90.3% 73.6%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.72 56.0 3.44e-01 100.0% 14.7%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.72 51.0 3.14e-01 77.4% 22.8%
6tqfA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.71 49.0 2.75e-01 96.8% 5.9%
4n06A02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.70 54.0 3.24e-01 100.0% 13.3%
4hcwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.70 49.0 3.04e-01 74.2% 41.0%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 47.0 3.12e-01 71.0% 17.6%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 51.0 3.56e-01 87.1% 27.5%
2e1mA04 3.30.160.490 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 51.0 4.91e-01 83.9% 100.0%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.65 48.0 4.60e-01 80.6% 58.3%
2pvuA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 47.0 3.18e-01 80.6% 28.5%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.65 47.0 4.04e-01 90.3% 48.3%
2m1sA01 3.30.160.310 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 44.0 4.40e-01 74.2% 65.7%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.49e-01 83.9% 35.6%
6tg9C01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 43.0 3.27e-01 83.9% 27.0%
17gsA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 43.0 3.15e-01 80.6% 28.3%
1nztA01 3.30.230.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › lpxc deacetylase, domain 1 0.61 43.0 3.02e-01 87.1% 21.0%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.59 45.0 3.63e-01 93.5% 40.3%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.59 41.0 3.48e-01 93.5% 37.1%
2xqnT01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.57 41.0 3.45e-01 77.4% 35.5%
4hltA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 43.0 2.79e-01 83.9% 20.9%
1x62A01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 40.0 3.48e-01 90.3% 70.0%
1b48A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 38.0 2.93e-01 80.6% 29.2%
1x0gA00 2.60.300.12 Mainly Beta › Sandwich › Hypothetical Protein Aq_1857; Chain: A; › HesB-like domain 0.51 38.0 2.82e-01 90.3% 52.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4529421 865.1.1.2 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C 0.85 59.0 4.00e-01 74.2% 21.9%
3996748 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.85 60.0 4.90e-01 74.2% 45.5%
3978063 304.51.1.3 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc 0.84 69.0 4.51e-01 93.5% 22.3%
3618097 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.83 66.0 5.33e-01 90.3% 48.3%
4516104 865.1.1.2 ↗ beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › TilS_C 0.83 58.0 3.78e-01 74.2% 18.4%
3262813 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.78 64.0 3.86e-01 100.0% 66.7%
4995731 502.1.1.0 ↗ a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain 0.78 56.0 4.48e-01 74.2% 48.3%
3786451 327.5.1.7 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › Mug62 0.77 51.0 3.08e-01 87.1% 10.6%
3435304 376.1.1.52 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › LIM 0.77 56.0 4.47e-01 80.6% 40.0%
3814043 101.1.10.21 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C 0.76 57.0 3.37e-01 87.1% 10.2%
4014333 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.75 55.0 5.41e-01 87.1% 74.3%
4190838 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.75 50.0 3.45e-01 74.2% 20.0%
5027627 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 53.0 4.51e-01 80.6% 100.0%
5011299 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 51.0 3.44e-01 74.2% 20.9%
5042985 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.72 52.0 3.09e-01 80.6% 12.9%
3622893 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 50.0 2.78e-01 74.2% 7.1%
5061456 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.71 53.0 5.14e-01 93.5% 72.5%
3336883 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.71 50.0 4.65e-01 80.6% 57.8%
1240484 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.70 50.0 2.86e-01 77.4% 10.6%
4987757 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.69 52.0 3.61e-01 83.9% 26.0%
5004081 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.67 51.0 3.03e-01 100.0% 10.9%
3960493 1001.1.1.0 ↗ a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.66 48.0 3.32e-01 83.9% 24.0%
3686933 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.66 55.0 3.43e-01 93.5% 74.9%
3900763 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 46.0 4.69e-01 71.0% 73.3%
3662636 10.12.1.14 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin,Pirin_C 0.62 45.0 2.58e-01 71.0% 84.3%
4971724 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.61 52.0 2.94e-01 100.0% 9.0%
3522756 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 43.0 4.34e-01 71.0% 73.3%
4940041 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 41.0 4.12e-01 77.4% 65.7%
3252156 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 42.0 4.03e-01 77.4% 62.5%
5024465 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.75e-01 100.0% 62.7%
4403563 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.57 39.0 4.00e-01 83.9% 73.3%
3511728 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.56 41.0 3.80e-01 80.6% 55.6%
3617313 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.51 39.0 3.84e-01 87.1% 74.3%
3781458 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.50 37.0 3.54e-01 71.0% 50.0%