←Back to structures

KJ018211.1__AHK11513.1__S140_106__00103

Bact-Vir

KJ018211.1__AHK11513.1__S140_106__00103

Identity

Accession:
KJ018211 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_sp._phage_1/40

TaxID: 1458860

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.85 71.0 7.04e-01 92.2% 96.3%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.85 67.0 6.77e-01 84.3% 98.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 62.0 6.05e-01 80.4% 87.5%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.83 69.0 5.59e-01 92.2% 68.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 57.0 5.93e-01 72.5% 100.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 62.0 6.22e-01 80.4% 98.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 61.0 6.18e-01 82.4% 94.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 59.0 5.64e-01 78.4% 94.9%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 63.0 6.12e-01 86.3% 94.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 68.0 6.15e-01 94.1% 88.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 63.0 5.86e-01 86.3% 78.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.80 61.0 6.11e-01 82.4% 88.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 63.0 5.57e-01 88.2% 69.9%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.79 65.0 5.56e-01 92.2% 93.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 59.0 5.05e-01 80.4% 73.4%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 58.0 4.38e-01 80.4% 49.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 62.0 6.01e-01 88.2% 94.6%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 55.0 5.81e-01 76.5% 97.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 61.0 5.79e-01 90.2% 90.3%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 63.0 5.91e-01 94.1% 85.7%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.76 60.0 6.06e-01 86.3% 96.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 68.0 6.08e-01 100.0% 73.2%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 55.0 5.33e-01 78.4% 96.5%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.75 64.0 6.07e-01 94.1% 96.7%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 57.0 5.70e-01 86.3% 98.1%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.74 64.0 5.66e-01 96.1% 76.7%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.75e-01 84.3% 90.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 5.03e-01 98.0% 58.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 56.0 5.44e-01 92.2% 91.7%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.46e-01 86.3% 94.0%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 5.43e-01 100.0% 97.1%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 50.0 4.57e-01 78.4% 90.0%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 55.0 4.39e-01 92.2% 86.4%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.69 59.0 4.16e-01 100.0% 88.9%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.68 54.0 4.46e-01 90.2% 56.1%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 4.94e-01 98.0% 68.7%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.64 46.0 4.49e-01 76.5% 70.2%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 54.0 4.45e-01 96.1% 71.0%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.63 43.0 4.25e-01 72.5% 85.7%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 52.0 4.68e-01 94.1% 71.8%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.62 49.0 4.02e-01 94.1% 91.6%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.61 49.0 3.13e-01 94.1% 24.1%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 50.0 4.20e-01 96.1% 73.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.44e-01 96.1% 93.9%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 3.46e-01 96.1% 34.3%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 44.0 3.60e-01 86.3% 97.2%
2b1xA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.55 43.0 3.38e-01 94.1% 84.9%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 40.0 3.30e-01 90.2% 80.7%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 37.0 2.48e-01 76.5% 20.1%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 42.0 3.73e-01 96.1% 75.6%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.52 37.0 3.45e-01 82.4% 74.0%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.51 36.0 3.33e-01 78.4% 82.9%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.92e-01 100.0% 56.1%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 2.98e-01 100.0% 72.9%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3907619 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.86 70.0 5.83e-01 88.2% 60.0%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.86 73.0 6.50e-01 92.2% 75.7%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.85 72.0 5.43e-01 92.2% 48.7%
5050368 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.85 71.0 5.68e-01 92.2% 67.3%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 68.0 6.55e-01 88.2% 87.9%
3228278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 69.0 6.39e-01 90.2% 80.0%
4941299 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.83 68.0 5.67e-01 88.2% 72.9%
3389169 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 70.0 5.88e-01 92.2% 63.5%
5064571 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 69.0 5.69e-01 92.2% 72.2%
4995678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 63.0 6.22e-01 82.4% 92.7%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 69.0 6.57e-01 92.2% 91.7%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 68.0 6.64e-01 90.2% 94.5%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 66.0 5.43e-01 88.2% 57.8%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.82 72.0 4.91e-01 96.1% 32.7%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 70.0 6.32e-01 96.1% 85.7%
None — 0.81 61.0 3.32e-01 80.4% 5.5%
3617111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 67.0 5.55e-01 92.2% 58.9%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 67.0 5.59e-01 90.2% 61.2%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.81 71.0 6.50e-01 96.1% 90.8%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 65.0 6.38e-01 88.2% 89.1%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.81 70.0 6.44e-01 96.1% 90.8%
4990212 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 64.0 6.28e-01 86.3% 90.9%
3398093 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.81 67.0 6.32e-01 90.2% 88.3%
3989139 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.81 67.0 6.15e-01 90.2% 76.9%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.81 70.0 6.11e-01 96.1% 84.0%
5044373 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 65.0 6.21e-01 90.2% 88.3%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 70.0 6.84e-01 96.1% 90.9%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 68.0 6.15e-01 96.1% 85.7%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.80 70.0 6.86e-01 98.0% 94.5%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 64.0 6.29e-01 88.2% 90.9%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.80 68.0 6.16e-01 96.1% 82.9%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 69.0 6.39e-01 98.0% 98.5%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.79 65.0 6.02e-01 90.2% 76.9%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.79 69.0 6.34e-01 96.1% 87.7%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 62.0 6.48e-01 84.3% 100.0%
3407854 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 64.0 5.24e-01 90.2% 55.8%
3964846 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.79 66.0 5.56e-01 92.2% 61.2%
4369736 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.79 60.0 6.35e-01 84.3% 93.3%
5013892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 68.0 6.67e-01 96.1% 96.4%
5066141 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.79 67.0 6.22e-01 96.1% 89.2%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 67.0 6.56e-01 98.0% 87.3%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.78 66.0 6.10e-01 92.2% 76.9%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 63.0 5.88e-01 90.2% 98.5%
4611708 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.78 65.0 6.13e-01 90.2% 78.3%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.78 60.0 5.90e-01 82.4% 88.9%
4347999 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.78 64.0 5.90e-01 90.2% 76.9%
5042477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 62.0 6.50e-01 86.3% 97.8%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 66.0 6.51e-01 96.1% 92.7%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.53e-01 96.1% 94.5%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.77 60.0 5.57e-01 86.3% 86.2%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 66.0 6.48e-01 96.1% 94.5%
5040416 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 61.0 6.15e-01 88.2% 98.0%
4032729 4.1.1.168 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2187 0.77 62.0 6.00e-01 90.2% 98.3%
4357819 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.76 69.0 6.15e-01 100.0% 74.3%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.76 62.0 5.65e-01 92.2% 77.1%
4931822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 61.0 5.65e-01 90.2% 81.5%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 64.0 5.79e-01 96.1% 82.9%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 6.37e-01 98.0% 92.7%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 63.0 6.19e-01 96.1% 94.5%
4225207 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.73 63.0 5.98e-01 98.0% 83.3%
4182977 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.72 58.0 5.54e-01 92.2% 81.7%
3385474 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.72 60.0 4.14e-01 94.1% 45.7%
3821919 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.71 63.0 5.95e-01 100.0% 83.3%
4963446 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.61e-01 100.0% 95.4%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 5.88e-01 100.0% 92.7%
3634374 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 52.0 5.29e-01 86.3% 92.0%
3591670 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.48e-01 96.1% 96.4%
4128405 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 54.0 4.88e-01 94.1% 71.4%
4526316 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 53.0 4.39e-01 94.1% 52.6%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 51.0 4.78e-01 94.1% 76.9%
3649175 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 49.0 3.00e-01 94.1% 14.5%
3222612 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 48.0 4.07e-01 94.1% 94.7%
3511200 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.61 48.0 4.20e-01 94.1% 94.1%
3257279 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 2.75e-01 96.1% 27.5%
3640969 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 47.0 2.99e-01 96.1% 35.7%
5021656 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.58 40.0 4.08e-01 74.5% 84.0%