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KJ018212.1__AHK11657.1__S141_11__00011

Bact-Vir

KJ018212.1__AHK11657.1__S141_11__00011

Identity

Accession:
KJ018212 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_sp._phage_1/41

TaxID: 1458861

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-78
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r6iA01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.76 58.0 4.86e-01 91.1% 49.0%
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.73 54.0 5.14e-01 92.9% 68.2%
5h8yD02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.65 53.0 3.64e-01 92.9% 36.5%
1ti2A01 2.20.25.340 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 37.0 3.58e-01 71.4% 48.5%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.59 41.0 3.89e-01 100.0% 60.6%
4dmgA01 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.58 37.0 3.41e-01 98.2% 50.0%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 49.0 3.88e-01 98.2% 70.2%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 41.0 3.50e-01 94.6% 46.0%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 37.0 3.12e-01 100.0% 38.1%
5g5tA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 43.0 2.99e-01 91.1% 30.4%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.28e-01 89.3% 42.2%
2kpiA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 32.0 3.51e-01 78.6% 82.1%
1q8iA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 44.0 3.18e-01 100.0% 42.7%
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.32e-01 94.6% 43.1%
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 38.0 2.86e-01 100.0% 28.3%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 43.0 3.52e-01 91.1% 87.5%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.52 43.0 3.34e-01 100.0% 88.3%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 40.0 2.72e-01 87.5% 43.7%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 41.0 2.89e-01 92.9% 60.5%
3e11A00 3.30.2010.20 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.51 37.0 2.94e-01 76.8% 85.1%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.30e-01 94.6% 45.2%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.28e-01 92.9% 46.7%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.29e-01 78.6% 24.2%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 38.0 3.27e-01 87.5% 54.5%
5nz7A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.50 44.0 2.74e-01 100.0% 23.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3865098 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.78 58.0 3.79e-01 92.9% 18.8%
4024943 4351.1.1.0 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like 0.78 61.0 4.05e-01 91.1% 21.8%
3382157 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.77 59.0 3.86e-01 92.9% 19.2%
53362 4351.1.1.0 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like 0.76 56.0 3.68e-01 92.9% 19.3%
3626029 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.74 57.0 3.72e-01 92.9% 19.7%
3438866 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.73 56.0 3.64e-01 92.9% 18.8%
3543 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.73 54.0 3.57e-01 92.9% 19.3%
3211833 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.73 59.0 3.88e-01 92.9% 21.3%
3495925 4351.1.1.0 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like 0.72 58.0 3.85e-01 91.1% 21.7%
3632014 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.71 55.0 3.52e-01 92.9% 18.1%
1046 65.1.1.4 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › HUTI_composite_bact 0.65 48.0 4.91e-01 100.0% 83.3%
4419505 296.1.1.1 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.64 51.0 3.43e-01 91.1% 28.2%
4061056 2004.1.1.100 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NTPase_1 0.64 55.0 3.91e-01 100.0% 55.6%
5081097 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 54.0 3.71e-01 100.0% 29.5%
3260432 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 46.0 2.76e-01 100.0% 10.6%
3576800 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.60 49.0 4.17e-01 92.9% 86.3%
3225703 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 39.0 3.91e-01 91.1% 65.0%
3680084 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.58 42.0 3.87e-01 100.0% 58.7%
3950281 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.58 39.0 2.63e-01 71.4% 76.4%
3455699 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.57 41.0 3.63e-01 76.8% 77.1%
3529782 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 45.0 3.57e-01 98.2% 42.6%
4013549 296.1.1.0 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 0.56 47.0 3.25e-01 96.4% 45.9%
4985674 862.1.1.5 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol 0.55 45.0 2.92e-01 94.6% 47.7%
3943244 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.54 38.0 2.94e-01 100.0% 31.2%
3272903 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.83e-01 100.0% 92.0%
3301880 2003.1.2.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI 0.53 33.0 2.05e-01 91.1% 10.4%
4953226 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 34.0 3.26e-01 91.1% 55.4%
3204926 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.53 41.0 3.89e-01 91.1% 71.4%
4316044 101.1.2.388 ↗ alpha arrays › HTH › HTH › winged helix domain › YjhX_toxin 0.53 40.0 3.58e-01 89.3% 70.0%
3920826 844.1.1.4 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Scramblase 0.51 36.0 2.61e-01 75.0% 24.7%
4834236 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 41.0 3.23e-01 94.6% 40.3%
5042979 241.1.1.30 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 0.51 39.0 2.99e-01 89.3% 72.0%
3221919 246.3.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.51 39.0 2.50e-01 96.4% 89.5%
3839957 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.51 42.0 2.68e-01 100.0% 17.1%
3303909 304.9.1.57 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › zf-CCHC_4 0.50 31.0 2.69e-01 100.0% 33.7%
4096988 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 39.0 2.70e-01 94.6% 22.1%