←Back to structures

KJ018212.1__AHK11669.1__S141_23__00023

Bact-Vir

KJ018212.1__AHK11669.1__S141_23__00023

Identity

Accession:
KJ018212 ↗
Kingdom:
phage

Quality

59.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_sp._phage_1/41

TaxID: 1458861

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-115
PDB
D2 high residues 133-206
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.90 61.0 6.36e-01 70.3% 75.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.87 54.0 6.62e-01 83.8% 97.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 60.0 6.09e-01 78.4% 74.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 60.0 6.81e-01 77.0% 98.2%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 57.0 6.09e-01 77.0% 81.2%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 57.0 5.34e-01 90.5% 58.9%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 56.0 6.04e-01 70.3% 85.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.81 53.0 6.31e-01 87.8% 96.2%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 50.0 6.08e-01 78.4% 97.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.79 55.0 5.74e-01 71.6% 95.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.79 48.0 6.00e-01 82.4% 100.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 57.0 4.94e-01 75.7% 60.2%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.76 47.0 5.54e-01 74.3% 92.0%
2akkA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 53.0 5.39e-01 74.3% 89.2%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 50.0 5.52e-01 70.3% 90.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 4.93e-01 73.0% 82.1%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 50.0 4.03e-01 73.0% 44.0%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 48.0 4.36e-01 70.3% 87.9%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 50.0 5.58e-01 83.8% 94.9%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.69 61.0 4.39e-01 98.6% 76.6%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.10e-01 81.1% 85.2%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 47.0 4.48e-01 70.3% 64.7%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 4.91e-01 70.3% 86.4%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.68 50.0 4.59e-01 78.4% 61.2%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.68 61.0 4.55e-01 100.0% 90.8%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 55.0 5.38e-01 95.9% 81.0%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 46.0 4.04e-01 79.7% 46.9%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.41e-01 79.7% 67.6%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.65 47.0 3.53e-01 77.0% 78.7%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 54.0 4.53e-01 93.2% 85.5%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 56.0 4.57e-01 97.3% 87.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 5.13e-01 89.2% 85.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.63 40.0 4.23e-01 83.8% 72.7%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 52.0 4.43e-01 93.2% 70.4%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 4.54e-01 100.0% 69.8%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 51.0 4.34e-01 93.2% 86.4%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.61 50.0 4.25e-01 90.5% 75.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 52.0 5.10e-01 100.0% 88.5%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 44.0 3.42e-01 79.7% 96.6%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 51.0 4.31e-01 98.6% 58.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 47.0 4.05e-01 86.5% 80.9%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 42.0 4.13e-01 77.0% 96.2%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.64e-01 87.8% 98.3%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 39.0 2.97e-01 70.3% 83.2%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 38.0 4.21e-01 79.7% 94.7%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.53 46.0 3.45e-01 100.0% 94.4%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.67e-01 86.5% 64.9%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.53 41.0 3.78e-01 82.4% 90.4%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 44.0 4.50e-01 91.9% 97.1%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 2.89e-01 98.6% 97.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.50 37.0 3.38e-01 78.4% 82.0%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 42.0 2.84e-01 95.9% 89.5%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
140210 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.90 61.0 6.36e-01 70.3% 75.4%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.90 63.0 6.00e-01 77.0% 63.5%
3907619 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.88 62.0 5.91e-01 77.0% 63.5%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.88 62.0 7.06e-01 77.0% 93.1%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.87 63.0 7.13e-01 77.0% 94.8%
4084190 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.87 62.0 6.90e-01 77.0% 91.5%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 58.0 6.75e-01 74.3% 92.7%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.87 59.0 6.14e-01 70.3% 75.7%
3518844 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.87 61.0 5.82e-01 73.0% 65.9%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.85 58.0 4.03e-01 70.3% 27.9%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.85 55.0 4.87e-01 86.5% 49.0%
3660922 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.85 59.0 6.25e-01 71.6% 86.2%
3546607 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.85 55.0 6.58e-01 86.5% 98.0%
3998022 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.84 55.0 6.30e-01 86.5% 89.1%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.84 56.0 6.49e-01 74.3% 92.7%
3833030 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.84 62.0 4.97e-01 77.0% 80.0%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 57.0 3.94e-01 70.3% 24.9%
3492982 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.84 60.0 4.79e-01 93.2% 40.7%
3852545 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 60.0 6.63e-01 77.0% 91.7%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.84 58.0 6.65e-01 74.3% 96.4%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 59.0 5.59e-01 73.0% 67.1%
5057234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 56.0 5.75e-01 82.4% 72.9%
4418620 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 54.0 2.94e-01 86.5% 4.8%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.83 55.0 5.28e-01 87.8% 60.2%
3229601 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.83 54.0 5.93e-01 82.4% 81.7%
3937194 4.1.1.249 ↗ beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.83 58.0 6.23e-01 73.0% 92.3%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.83 54.0 6.21e-01 75.7% 90.9%
3517728 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.83 58.0 6.01e-01 74.3% 77.1%
3404936 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 53.0 6.42e-01 86.5% 98.0%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 57.0 5.73e-01 73.0% 70.7%
None — 0.82 54.0 2.92e-01 86.5% 3.9%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.82 53.0 3.93e-01 86.5% 28.0%
3620094 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 53.0 6.08e-01 82.4% 89.1%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.82 56.0 6.42e-01 74.3% 94.5%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 52.0 6.34e-01 87.8% 98.0%
4844109 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 53.0 5.40e-01 86.5% 69.0%
3238405 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 53.0 6.13e-01 82.4% 90.9%
3775592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 53.0 2.85e-01 86.5% 3.2%
3389169 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.80 60.0 5.71e-01 78.4% 68.2%
3550644 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 52.0 5.98e-01 79.7% 90.9%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.79 55.0 5.87e-01 74.3% 81.5%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.79 51.0 5.91e-01 86.5% 90.7%
5038340 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.79 54.0 5.40e-01 70.3% 82.7%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.79 52.0 4.94e-01 86.5% 58.8%
3996679 4.1.1.251 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5 0.78 52.0 5.96e-01 77.0% 92.7%
3616007 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.77 55.0 6.32e-01 75.7% 100.0%
3508415 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 61.0 4.94e-01 82.4% 73.8%
3404643 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 55.0 5.66e-01 74.3% 85.7%
4554867 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.77 54.0 5.71e-01 73.0% 93.8%
3571487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 55.0 5.56e-01 74.3% 82.2%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 57.0 5.84e-01 78.4% 95.7%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 55.0 5.87e-01 77.0% 92.3%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.75 57.0 4.87e-01 79.7% 93.0%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 52.0 5.37e-01 73.0% 87.1%
3275404 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.44e-01 74.3% 85.0%
4044896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.25e-01 74.3% 77.3%
3721973 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.73 52.0 5.20e-01 74.3% 82.7%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 50.0 5.06e-01 73.0% 84.0%
3839042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 43.0 5.34e-01 71.6% 100.0%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.71e-01 79.7% 95.4%
3839016 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 54.0 5.71e-01 81.1% 93.8%
3950458 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.71 48.0 3.63e-01 71.6% 46.7%
4093911 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 53.0 5.35e-01 81.1% 88.0%
4514731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 4.97e-01 78.4% 72.9%
2570822 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.69 61.0 4.93e-01 100.0% 88.3%
3970579 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.69 60.0 4.77e-01 97.3% 88.0%
3627869 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.69 52.0 4.05e-01 79.7% 65.2%
5002601 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.68 46.0 5.07e-01 70.3% 98.3%
4287411 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.68 50.0 4.88e-01 77.0% 83.7%
3240651 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 53.0 5.19e-01 98.6% 77.5%
3385856 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.67 53.0 5.80e-01 83.8% 98.4%
3385461 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.64 54.0 4.41e-01 97.3% 93.8%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.63 43.0 4.18e-01 75.7% 62.4%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.60 56.0 4.11e-01 100.0% 81.7%
4646501 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 3.84e-01 97.3% 49.7%