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KJ018212.1__AHK11680.1__S141_34__00034

Bact-Vir

KJ018212.1__AHK11680.1__S141_34__00034

Identity

Accession:
KJ018212 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_sp._phage_1/41

TaxID: 1458861

Cluster

View cluster (116 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-94
PDB
Domain cluster: rep: MG018926.1__ATW57883.1__CNR33_00037__00037__D18-114
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.62 51.0 5.25e-01 88.5% 100.0%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.60 53.0 5.33e-01 96.2% 97.4%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 4.05e-01 91.0% 62.7%
6mnuD00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 43.0 3.02e-01 100.0% 43.6%
1r3eA02 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.50 34.0 3.40e-01 88.5% 66.7%
2g6gA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.50 37.0 2.90e-01 87.2% 32.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002644 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.76 64.0 6.53e-01 88.5% 94.7%
3948608 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.74 56.0 6.03e-01 84.6% 95.4%
3398750 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.65 54.0 5.37e-01 89.7% 95.0%
4935036 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.63 53.0 5.52e-01 92.3% 97.3%
3516152 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.63 54.0 5.25e-01 93.6% 96.5%
4938684 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.62 55.0 5.37e-01 96.2% 92.9%
4507246 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.62 54.0 5.35e-01 93.6% 97.5%
1176867 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.62 54.0 5.12e-01 94.9% 86.8%
4983299 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.61 52.0 5.06e-01 92.3% 88.2%
1176847 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.60 52.0 5.32e-01 94.9% 96.1%
4963598 1.1.7.150 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26503 0.60 40.0 4.11e-01 92.3% 72.0%
3246591 2492.1.1.8 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.51 37.0 2.90e-01 78.2% 97.4%
4566229 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.51 42.0 2.60e-01 93.6% 23.0%
3492939 7.1.1.1 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.50 42.0 3.84e-01 93.6% 85.7%
D2 high residues 97-158
PDB
Domain cluster: rep: NC_054466.1__YP_010053019.1__KE336_gp49__00049__D101-158
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.73 64.0 5.58e-01 100.0% 64.5%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.71 48.0 4.84e-01 80.6% 70.5%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.67 48.0 4.76e-01 85.5% 71.2%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.67 59.0 5.15e-01 100.0% 90.5%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.65 57.0 5.48e-01 98.4% 100.0%
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.65 48.0 4.76e-01 85.5% 75.0%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 43.0 3.89e-01 100.0% 51.6%
1uz5A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.62 54.0 5.19e-01 100.0% 94.4%
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.61 53.0 4.99e-01 100.0% 90.9%
1yu0A02 2.80.20.10 Mainly Beta › Trefoil › Tail fiber receptor-binding protein › Tail fiber receptor-binding protein 0.59 49.0 3.87e-01 100.0% 74.0%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.59 50.0 4.74e-01 96.8% 98.6%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 39.0 3.08e-01 80.6% 77.1%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 37.0 3.22e-01 74.2% 100.0%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.30e-01 82.3% 55.2%
7ekdA01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.53 38.0 2.51e-01 80.6% 80.9%
3sumB00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.52 39.0 3.13e-01 83.9% 66.9%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 40.0 3.42e-01 100.0% 49.5%
1gn4A02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.52 44.0 3.70e-01 100.0% 89.6%
2ypjA00 2.60.120.1070 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 3.11e-01 80.6% 79.5%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.56e-01 100.0% 81.8%
3h96C00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 41.0 3.25e-01 93.5% 65.2%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.50 37.0 3.07e-01 82.3% 54.9%
5yl6A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.50 34.0 2.58e-01 72.6% 72.2%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.50 37.0 2.60e-01 100.0% 22.3%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945811 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.90 79.0 8.03e-01 98.4% 96.7%
3513462 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.87 75.0 7.69e-01 100.0% 96.7%
4963571 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.72 58.0 5.74e-01 100.0% 83.1%
5022524 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.72 57.0 5.51e-01 100.0% 77.1%
5016125 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.71 56.0 5.86e-01 98.4% 96.4%
5033307 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.70 62.0 4.72e-01 100.0% 43.6%
5039270 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.69 55.0 5.76e-01 98.4% 96.4%
2808420 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.68 60.0 5.00e-01 100.0% 78.9%
5027909 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 42.0 4.28e-01 82.3% 65.0%
1886098 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.67 48.0 4.76e-01 85.5% 71.2%
5083816 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.66 59.0 5.69e-01 100.0% 92.9%
3960403 4076.2.1.0 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like 0.65 47.0 4.71e-01 85.5% 73.8%
1175478 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.65 46.0 4.40e-01 82.3% 63.9%
1518911 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.64 46.0 4.27e-01 85.5% 58.7%
3970970 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.64 56.0 5.34e-01 100.0% 96.0%
4980022 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 44.0 4.86e-01 83.9% 90.0%
4990371 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.64 57.0 5.48e-01 100.0% 97.1%
2526359 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.63 50.0 5.05e-01 100.0% 91.7%
4602455 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.63 54.0 5.22e-01 100.0% 97.3%
3433288 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.62 48.0 3.38e-01 87.1% 46.4%
3959516 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.62 54.0 5.15e-01 100.0% 96.0%
3283905 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.61 52.0 5.09e-01 98.4% 95.7%
148141 4076.2.1.1 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.60 40.0 3.80e-01 80.6% 56.8%
1107991 4166.1.1.4 ↗ beta sandwiches › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › Lactophage receptor-binding protein N-terminal domain-like › mtd_2nd 0.60 51.0 4.28e-01 100.0% 91.4%
5031828 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.60 43.0 3.15e-01 79.0% 83.7%
3478167 2492.1.1.19 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › STIL_N 0.59 50.0 3.95e-01 100.0% 93.1%
3205316 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.59 52.0 4.62e-01 100.0% 95.6%
3392605 2492.1.1.49 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26560 0.57 46.0 3.79e-01 96.8% 83.1%
4617493 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.57 48.0 4.49e-01 100.0% 91.3%
4110599 1.1.5.11 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD 0.55 45.0 3.26e-01 96.8% 71.4%
3814411 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 40.0 3.49e-01 85.5% 81.9%
3178433 4329.1.1.1 ↗ a+b complex topology › ORC1-binding domain › ORC1-binding domain › ORC1-binding domain › Sir1 0.53 44.0 3.58e-01 95.2% 57.6%
2775138 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 38.0 2.95e-01 79.0% 47.7%
5036101 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.16e-01 80.6% 59.1%
4957982 11.1.4.27 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › fn3_3 0.51 37.0 3.15e-01 82.3% 46.1%
3544799 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.51 38.0 3.12e-01 85.5% 88.5%
3308035 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 37.0 2.96e-01 82.3% 62.1%
3469207 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 38.0 3.51e-01 83.9% 68.2%