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KJ018213.1__AHK11731.1__S144_17__00017

Bact-Vir

KJ018213.1__AHK11731.1__S144_17__00017

Identity

Accession:
KJ018213 ↗
Kingdom:
phage

Quality

67.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_sp._phage_1/44

TaxID: 1458862

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 22-77
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lg1A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 62.0 4.87e-01 100.0% 74.8%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 5.18e-01 92.9% 91.7%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 57.0 4.28e-01 100.0% 62.4%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 56.0 4.65e-01 100.0% 75.7%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 4.15e-01 100.0% 61.4%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.75e-01 100.0% 75.8%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 55.0 4.49e-01 100.0% 76.7%
5u78C00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.30e-01 100.0% 83.6%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 53.0 3.94e-01 100.0% 75.3%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 54.0 4.16e-01 100.0% 63.7%
3tfmA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.43e-01 100.0% 81.8%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.02e-01 100.0% 78.4%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.60 47.0 3.97e-01 100.0% 49.5%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 52.0 4.21e-01 100.0% 58.3%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.23e-01 100.0% 76.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.65e-01 98.2% 93.9%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.73e-01 96.4% 84.6%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 45.0 3.59e-01 91.1% 66.7%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.04e-01 100.0% 81.0%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 45.0 3.60e-01 89.3% 69.7%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 51.0 4.01e-01 100.0% 72.4%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.57 50.0 3.78e-01 100.0% 65.2%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.04e-01 100.0% 73.8%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.89e-01 96.4% 15.5%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.57 47.0 3.50e-01 100.0% 37.2%
5ajqA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 42.0 3.76e-01 83.9% 84.9%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 3.86e-01 100.0% 68.1%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.56 42.0 3.27e-01 83.9% 96.4%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 3.89e-01 100.0% 79.5%
2fm8B00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 44.0 3.53e-01 91.1% 71.2%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.55 42.0 3.06e-01 83.9% 46.1%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.93e-01 100.0% 72.5%
2coaA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.77e-01 100.0% 81.4%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 46.0 4.43e-01 94.6% 85.9%
1v5pA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.85e-01 100.0% 87.4%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.55 42.0 3.94e-01 100.0% 67.5%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 44.0 3.44e-01 96.4% 95.8%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.54 42.0 3.02e-01 87.5% 60.5%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 39.0 3.30e-01 80.4% 76.8%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.70e-01 94.6% 82.1%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 44.0 4.01e-01 98.2% 71.2%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.77e-01 94.6% 56.2%
3wa1A01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.30e-01 100.0% 100.0%
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 41.0 3.11e-01 89.3% 76.5%
2z0bE00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.35e-01 89.3% 95.3%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 3.06e-01 89.3% 91.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.51 40.0 3.58e-01 92.9% 96.6%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.50e-01 100.0% 78.2%
1zpsA01 3.10.20.810 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase 0.51 41.0 3.66e-01 100.0% 85.3%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 38.0 2.59e-01 87.5% 46.5%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.50 36.0 3.15e-01 82.1% 46.9%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3487225 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 67.0 5.02e-01 100.0% 64.3%
3540139 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.74 65.0 5.03e-01 98.2% 71.7%
3392597 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.73 65.0 4.88e-01 100.0% 62.2%
3518432 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.73 64.0 5.03e-01 98.2% 75.7%
3244890 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 63.0 4.89e-01 98.2% 68.3%
3520566 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.71 61.0 4.36e-01 100.0% 64.6%
3263391 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.71 55.0 4.49e-01 87.5% 48.2%
3255034 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 62.0 4.65e-01 98.2% 54.8%
3709821 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 62.0 4.74e-01 100.0% 80.0%
3270273 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 61.0 3.38e-01 98.2% 11.2%
3862184 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.69 58.0 4.53e-01 100.0% 65.7%
3886411 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 58.0 4.51e-01 100.0% 65.2%
3493653 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.69 61.0 4.20e-01 100.0% 68.9%
3227570 220.1.1.47 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.68 59.0 4.23e-01 100.0% 51.2%
3992069 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 60.0 4.17e-01 100.0% 46.1%
3885860 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.67 59.0 4.11e-01 100.0% 60.5%
3249874 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.67 59.0 4.26e-01 100.0% 60.6%
26896 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.66 52.0 4.54e-01 100.0% 57.0%
3325360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.16e-01 100.0% 76.8%
5048008 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.65 50.0 3.53e-01 83.9% 47.4%
3226400 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.65 51.0 4.42e-01 100.0% 54.4%
3373330 4.1.1.337 ↗ beta barrels › SH3 › SH3 › SH3 › CSD_RNase_II 0.65 51.0 4.69e-01 100.0% 66.7%
3212338 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.06e-01 100.0% 61.9%
3626094 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.64 56.0 4.08e-01 100.0% 76.8%
3708284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.57e-01 94.6% 93.3%
3406898 220.1.1.125 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PLEKHM2 0.64 55.0 4.10e-01 98.2% 54.9%
3578905 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.63 54.0 4.69e-01 100.0% 62.2%
5074005 4.10.1.0 ↗ beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.62 50.0 4.22e-01 91.1% 100.0%
3800494 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 55.0 4.17e-01 100.0% 63.4%
3882131 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 55.0 3.31e-01 100.0% 20.5%
None — 0.62 51.0 3.67e-01 100.0% 98.4%
3536412 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 4.00e-01 100.0% 56.4%
3912099 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 54.0 4.42e-01 100.0% 71.4%
3217670 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.61 54.0 5.06e-01 100.0% 95.7%
4025181 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.61 53.0 4.31e-01 100.0% 70.9%
3700960 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 53.0 4.36e-01 100.0% 81.9%
3273564 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 53.0 4.60e-01 100.0% 75.6%
3870917 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 53.0 3.84e-01 100.0% 46.7%
3998850 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 51.0 4.20e-01 100.0% 75.5%
4398329 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 50.0 3.80e-01 100.0% 97.3%
3478706 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 52.0 3.83e-01 100.0% 52.7%
4542151 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.59 48.0 2.94e-01 91.1% 22.2%
3599101 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.13e-01 100.0% 74.8%
2387800 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 49.0 3.74e-01 100.0% 97.3%
3695678 3924.1.1.0 ↗ alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.59 44.0 2.66e-01 83.9% 22.0%
3810543 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.58 50.0 4.06e-01 100.0% 73.6%
3292855 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.56 48.0 3.79e-01 100.0% 68.8%
3634550 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.40e-01 89.3% 83.0%
3633627 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 45.0 3.39e-01 91.1% 36.6%
3479079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.72e-01 100.0% 82.4%
3207518 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.56 44.0 3.52e-01 98.2% 70.0%
3705072 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.55 42.0 3.48e-01 87.5% 87.0%
3568983 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 47.0 2.81e-01 100.0% 30.4%
160765 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 46.0 4.28e-01 100.0% 87.0%
3740122 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.55 45.0 3.60e-01 100.0% 78.2%
3438528 5.1.4.506 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_AT5G49610-like 0.55 47.0 2.92e-01 98.2% 31.8%
4937338 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.55 46.0 3.18e-01 100.0% 44.5%
3676414 206.1.2.2 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › PIP5K 0.54 45.0 3.19e-01 92.9% 45.7%
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.54 45.0 4.11e-01 100.0% 84.8%
3644406 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.54 38.0 2.87e-01 80.4% 28.4%
3608300 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.27e-01 100.0% 78.0%
3986083 10.12.1.28 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HutD 0.52 35.0 3.17e-01 75.0% 48.8%