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KJ018214.1__AHK11793.1__S349_3__00003

Bact-Vir

KJ018214.1__AHK11793.1__S349_3__00003

Identity

Accession:
KJ018214 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_sp._phage_3/49

TaxID: 1458863

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-172
PDB
Domain cluster: rep: OP947158.1__WBK39736.1__X__00020__D20-126
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 40.0 5.29e-01 81.6% 97.5%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 41.0 4.64e-01 83.7% 70.7%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 41.0 4.55e-01 82.3% 75.0%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 39.0 4.75e-01 81.0% 86.5%
3nppA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.68 34.0 4.24e-01 82.3% 79.3%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 42.0 4.87e-01 81.0% 91.2%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 36.0 4.23e-01 88.4% 84.7%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 28.0 3.06e-01 81.6% 53.0%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 38.0 4.43e-01 79.6% 95.2%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 4.17e-01 92.5% 75.4%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 28.0 3.56e-01 76.9% 76.9%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 35.0 4.19e-01 81.6% 91.8%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 32.0 3.19e-01 100.0% 53.4%
2konA00 3.30.160.350 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 27.0 3.46e-01 97.3% 89.0%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 23.0 3.05e-01 74.8% 83.3%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.51 30.0 3.26e-01 73.5% 69.4%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4102465 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 42.0 4.94e-01 81.0% 71.2%
3969377 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 37.0 5.05e-01 78.2% 86.5%
3282644 2.24.1.2 ↗ beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.73 33.0 4.79e-01 79.6% 95.4%
3387410 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 44.0 4.96e-01 90.5% 76.5%
3990098 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.73 41.0 4.75e-01 83.0% 74.5%
5010618 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 32.0 4.72e-01 93.2% 95.2%
4642580 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 41.0 4.77e-01 82.3% 77.1%
3784708 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.73 38.0 4.97e-01 79.6% 89.4%
5004339 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 43.0 4.12e-01 82.3% 51.8%
3296674 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.72 45.0 5.13e-01 81.6% 83.6%
4680169 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.72 41.0 4.75e-01 83.0% 78.1%
3314558 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.70 44.0 4.49e-01 81.6% 63.9%
4032678 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.69 39.0 4.65e-01 82.3% 81.0%
437095 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 41.0 4.55e-01 82.3% 75.0%
3658019 2.1.1.285 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3, CDC24_OB2 0.68 40.0 3.16e-01 83.0% 28.7%
5074611 2.26.1.1 ↗ beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.67 37.0 4.95e-01 81.0% 100.0%
3374948 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.67 42.0 5.04e-01 81.6% 92.0%
3991931 2.1.1.130 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.67 42.0 4.67e-01 82.3% 77.5%
3358498 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 36.0 4.39e-01 81.6% 79.0%
3473720 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.66 43.0 4.92e-01 81.0% 88.2%
3690510 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.64 42.0 4.84e-01 81.0% 90.0%
4429397 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.63 48.0 4.58e-01 78.9% 79.4%
4958429 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 37.0 4.50e-01 79.6% 89.5%
3365669 2.1.1.229 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.62 41.0 4.71e-01 81.6% 89.1%
4068016 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.62 41.0 4.78e-01 81.6% 93.3%
4962649 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 37.0 4.23e-01 82.3% 80.0%
3262461 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.58 49.0 4.59e-01 89.1% 81.7%
3791987 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.58 39.0 4.36e-01 82.3% 87.0%
3973947 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.58 27.0 3.70e-01 85.7% 88.6%
4018347 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 32.0 3.87e-01 81.6% 82.1%
3786205 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 43.0 4.39e-01 84.4% 82.9%
3260517 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 4.58e-01 81.0% 98.3%
3657702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 39.0 4.06e-01 82.3% 79.3%
4972474 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 2.61e-01 81.6% 24.9%
3830643 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 25.0 3.08e-01 79.6% 71.1%
3556738 220.1.1.40 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › OCRL_clath_bd 0.50 28.0 3.01e-01 79.6% 62.4%