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KJ019049.1__AIX19294.1__Syn7803C76_54__00054
Bact-VirKJ019049.1__AIX19294.1__Syn7803C76_54__00054
Identity
- Accession:
- KJ019049 ↗
- Kingdom:
- phage
Quality
82.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Nereusvirus›
Synechococcus_phage_ACG-2014b
TaxID: 1493508
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 43-92
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1akhB00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 63.0 | 5.52e-01 | 100.0% | 60.3% |
| 1uhsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 56.0 | 5.56e-01 | 100.0% | 75.9% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 59.0 | 5.11e-01 | 100.0% | 56.4% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.71 | 47.0 | 3.02e-01 | 70.0% | 94.1% |
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.68 | 57.0 | 5.12e-01 | 100.0% | 86.7% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 57.0 | 5.59e-01 | 100.0% | 89.3% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.66 | 46.0 | 4.22e-01 | 76.0% | 71.4% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 55.0 | 4.55e-01 | 92.0% | 55.2% |
| 2gtvX00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.64 | 52.0 | 4.29e-01 | 100.0% | 60.6% |
| 3l9tA01 | 1.10.1240.70 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.63 | 47.0 | 4.13e-01 | 96.0% | 51.8% |
| 3id7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.63 | 52.0 | 3.15e-01 | 98.0% | 12.8% |
| 1rm6D04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.63 | 53.0 | 3.50e-01 | 100.0% | 85.2% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.62 | 43.0 | 4.24e-01 | 72.0% | 75.0% |
| 1yirA00 | 3.20.140.10 | Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase | 0.62 | 54.0 | 3.23e-01 | 100.0% | 13.6% |
| 2xppA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.62 | 54.0 | 3.96e-01 | 100.0% | 69.3% |
| 4inzA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 47.0 | 2.94e-01 | 84.0% | 54.9% |
| 2jbrA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.60 | 50.0 | 3.93e-01 | 100.0% | 65.5% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.60 | 49.0 | 4.23e-01 | 100.0% | 61.8% |
| 2rfqB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.59 | 49.0 | 3.95e-01 | 100.0% | 72.5% |
| 3dfgA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 44.0 | 4.52e-01 | 98.0% | 95.8% |
| 1vfiA00 | 1.10.246.100 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 | 0.58 | 44.0 | 3.64e-01 | 86.0% | 46.3% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.57 | 47.0 | 2.87e-01 | 100.0% | 15.4% |
| 2jrmA00 | 1.10.10.620 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain | 0.57 | 36.0 | 3.46e-01 | 100.0% | 55.0% |
| 2b3yA01 | 3.30.499.10 | Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 | 0.57 | 49.0 | 3.17e-01 | 98.0% | 31.8% |
| 4qgpB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.56 | 41.0 | 3.25e-01 | 80.0% | 83.2% |
| 3m9vA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 44.0 | 3.49e-01 | 100.0% | 70.1% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 47.0 | 4.38e-01 | 96.0% | 81.0% |
| 2yviA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 39.0 | 3.40e-01 | 90.0% | 78.7% |
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.52 | 41.0 | 3.07e-01 | 100.0% | 64.2% |
| 3f4sA02 | 1.10.40.80 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › | 0.51 | 43.0 | 4.07e-01 | 100.0% | 81.2% |
| 8e7nB02 | 1.10.1840.10 | Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 | 0.50 | 42.0 | 3.39e-01 | 94.0% | 54.1% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.50 | 36.0 | 3.50e-01 | 94.0% | 70.7% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3928912 | 6126.1.1.0 ↗ | alpha bundles › Helical domain in EHD2 › Helical domain in EHD2 › Helical domain in EHD2 | 0.80 | 70.0 | 5.46e-01 | 100.0% | 53.6% |
| 3581762 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 61.0 | 4.81e-01 | 100.0% | 71.4% |
| 3652636 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.69 | 59.0 | 5.14e-01 | 100.0% | 67.5% |
| 3224625 | 101.1.2.374 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD | 0.67 | 56.0 | 4.91e-01 | 100.0% | 62.7% |
| 3174920 | 190.1.1.1 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box | 0.67 | 46.0 | 3.88e-01 | 72.0% | 43.5% |
| 3300335 | 101.1.1.28 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SWIRM | 0.67 | 55.0 | 4.47e-01 | 100.0% | 48.0% |
| 3261028 | 198.1.1.2 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 | 0.66 | 53.0 | 4.68e-01 | 100.0% | 61.2% |
| 5026124 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.65 | 55.0 | 5.16e-01 | 100.0% | 80.0% |
| 3931862 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 56.0 | 4.41e-01 | 100.0% | 61.8% |
| 3249893 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 54.0 | 4.57e-01 | 100.0% | 63.3% |
| 4967434 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.63 | 49.0 | 4.07e-01 | 86.0% | 63.3% |
| 5058880 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 54.0 | 4.93e-01 | 100.0% | 80.9% |
| 3783119 | 1075.1.2.12 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › EMP70 | 0.61 | 49.0 | 3.58e-01 | 92.0% | 56.0% |
| 3943035 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.60 | 49.0 | 4.53e-01 | 90.0% | 89.2% |
| 4024126 | 1065.1.1.0 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain | 0.58 | 49.0 | 3.24e-01 | 98.0% | 41.7% |
| 3804997 | 568.1.1.8 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › GCK | 0.57 | 46.0 | 3.59e-01 | 92.0% | 40.9% |
| 3936891 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 3.83e-01 | 100.0% | 58.9% |
| 3386119 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.55 | 44.0 | 3.01e-01 | 98.0% | 52.7% |
| 5060141 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.54 | 47.0 | 4.21e-01 | 94.0% | 73.9% |
| 5060803 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.52 | 45.0 | 4.35e-01 | 94.0% | 92.7% |
| 4369892 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.51 | 34.0 | 3.32e-01 | 72.0% | 71.7% |
D2
high
residues 108-200
Domain cluster:
rep: NC_047717.1__YP_009779463.1__HOQ66_gp182__00050__D207-299