←Back to structures

KJ019069.1__AIX24035.1__Syn7803US103_140__00140

Bact-Vir

KJ019069.1__AIX24035.1__Syn7803US103_140__00140

Identity

Accession:
KJ019069 ↗
Kingdom:
phage

Quality

77.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Potamoivirus› Synechococcus_phage_ACG-2014j

TaxID: 1493514

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-103
PDB
Domain cluster: rep: SCNpilot_BF_INOC_scaffold_63_prodigal-single.1__X__X__00054__D5-113
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.93 87.0 6.47e-01 98.0% 44.3%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.86 81.0 5.96e-01 100.0% 47.5%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 78.0 5.75e-01 100.0% 47.5%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 74.0 6.95e-01 100.0% 93.4%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 73.0 6.05e-01 100.0% 68.0%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 73.0 5.44e-01 100.0% 48.8%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 71.0 6.87e-01 100.0% 100.0%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 70.0 6.63e-01 100.0% 94.3%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 6.57e-01 100.0% 91.9%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 5.86e-01 100.0% 66.9%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 5.75e-01 100.0% 68.3%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 6.47e-01 100.0% 90.6%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 69.0 6.57e-01 100.0% 95.0%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 68.0 6.64e-01 100.0% 100.0%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 67.0 6.20e-01 100.0% 94.6%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 66.0 6.31e-01 100.0% 94.1%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 63.0 4.78e-01 100.0% 49.0%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 29.0 3.70e-01 99.0% 73.3%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 30.0 3.22e-01 93.1% 52.8%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 33.0 3.47e-01 71.6% 62.1%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.54 26.0 3.21e-01 94.1% 74.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5980 227.1.1.9 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_PPF 0.93 87.0 8.50e-01 98.0% 91.8%
4939065 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.86 81.0 7.60e-01 100.0% 96.7%
5059299 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.85 79.0 7.46e-01 100.0% 96.7%
4599875 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.85 79.0 7.46e-01 100.0% 95.8%
5990 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.84 78.0 7.29e-01 100.0% 95.1%
5039026 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.82 76.0 7.21e-01 100.0% 93.3%
1549269 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 74.0 6.97e-01 100.0% 94.2%
2492033 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 74.0 6.62e-01 100.0% 90.7%
4315973 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 74.0 6.88e-01 100.0% 96.0%
2392242 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 73.0 7.06e-01 100.0% 94.7%
4650306 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 73.0 6.90e-01 100.0% 96.7%
158230 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 72.0 6.71e-01 100.0% 96.1%
4047098 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 72.0 6.87e-01 100.0% 98.3%
4234515 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 72.0 6.82e-01 100.0% 97.5%
4251800 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 71.0 6.56e-01 100.0% 88.5%
4480621 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 71.0 6.75e-01 100.0% 95.0%
2878151 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 71.0 6.73e-01 100.0% 95.0%
1871494 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 71.0 6.68e-01 100.0% 95.0%
3534499 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.77 71.0 6.26e-01 100.0% 96.6%
4995742 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 70.0 6.89e-01 99.0% 97.3%
3015241 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 70.0 6.63e-01 100.0% 96.6%
2476832 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 69.0 6.32e-01 100.0% 91.1%
2987540 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 70.0 6.42e-01 100.0% 87.7%
2522057 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 69.0 6.53e-01 100.0% 93.5%
3387600 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 69.0 6.56e-01 100.0% 95.8%
5977 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.76 69.0 6.57e-01 100.0% 95.0%
5056758 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 66.0 6.33e-01 93.1% 93.9%
4948360 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 66.0 6.14e-01 95.1% 87.6%
4995744 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.75 66.0 6.22e-01 96.1% 90.2%
4941929 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 68.0 6.28e-01 100.0% 92.2%
3388280 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.74 67.0 6.38e-01 100.0% 93.3%
2096128 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.74 67.0 6.23e-01 100.0% 96.1%
144176 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.74 67.0 6.28e-01 100.0% 94.4%
3267918 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 28.0 3.73e-01 84.3% 90.9%
3586881 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.53 41.0 3.69e-01 85.3% 84.0%
3625202 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.53 33.0 3.87e-01 99.0% 91.4%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 27.0 3.28e-01 94.1% 80.0%
3973947 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.52 33.0 3.83e-01 77.5% 91.4%
3699699 5.1.4.179 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.52 38.0 3.04e-01 78.4% 77.3%