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KJ019085.1__AIX27458.1__Syn7803US13_98__00098

Bact-Vir

KJ019085.1__AIX27458.1__Syn7803US13_98__00098

Identity

Accession:
KJ019085 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-47
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.83 70.0 6.85e-01 100.0% 88.0%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.79 68.0 5.67e-01 100.0% 95.2%
1lfwA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 64.0 4.95e-01 100.0% 95.3%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.72 60.0 5.17e-01 100.0% 94.9%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 63.0 5.24e-01 100.0% 92.6%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.71 60.0 5.20e-01 100.0% 68.4%
1hq6B00 3.50.20.10 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B 0.69 56.0 3.68e-01 100.0% 32.0%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.63 49.0 3.37e-01 89.1% 75.4%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 50.0 3.88e-01 100.0% 49.6%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.63 50.0 4.58e-01 100.0% 66.7%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 47.0 3.42e-01 87.0% 35.6%
2llzA01 3.30.70.2360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 50.0 4.20e-01 100.0% 87.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 50.0 3.57e-01 100.0% 30.5%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 51.0 4.13e-01 100.0% 52.0%
4m8rA01 2.60.40.3920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 51.0 4.02e-01 100.0% 49.5%
7jnfA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 50.0 3.53e-01 100.0% 50.3%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 49.0 3.81e-01 100.0% 45.3%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 41.0 3.19e-01 89.1% 29.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 49.0 3.85e-01 100.0% 50.5%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 48.0 4.00e-01 100.0% 55.4%
2dvkA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.59 46.0 3.20e-01 100.0% 24.7%
3ifrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 46.0 3.05e-01 100.0% 48.3%
6genR01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.58 43.0 3.45e-01 100.0% 39.4%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 45.0 3.38e-01 89.1% 34.7%
5lvxC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 46.0 3.72e-01 100.0% 97.2%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 42.0 3.14e-01 87.0% 27.4%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 44.0 3.17e-01 89.1% 30.2%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 49.0 3.91e-01 100.0% 99.0%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 46.0 3.49e-01 100.0% 58.0%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 46.0 3.31e-01 95.7% 86.3%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 3.75e-01 100.0% 52.4%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.68e-01 100.0% 53.8%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 43.0 3.39e-01 100.0% 70.6%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 40.0 3.08e-01 87.0% 29.3%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.55 41.0 2.99e-01 89.1% 26.2%
3n5lA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 42.0 3.25e-01 100.0% 44.9%
2mf9A00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 43.0 3.14e-01 100.0% 49.0%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.54 43.0 3.49e-01 100.0% 43.4%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 3.20e-01 100.0% 53.9%
1dyqA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 41.0 3.11e-01 97.8% 73.9%
2fgzA01 2.60.40.1130 Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain 0.53 45.0 3.44e-01 100.0% 59.1%
3j7ye00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 44.0 3.24e-01 100.0% 65.7%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.52 42.0 3.09e-01 93.5% 59.3%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.52 39.0 3.39e-01 100.0% 56.4%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 38.0 2.84e-01 84.8% 75.7%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 38.0 2.60e-01 100.0% 18.1%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.52 41.0 3.83e-01 100.0% 89.2%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 42.0 3.27e-01 91.3% 76.2%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.51 37.0 2.70e-01 87.0% 37.6%
5v7qZ00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.51 40.0 3.85e-01 100.0% 98.3%
2qlvB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.44e-01 97.8% 52.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3409700 4114.1.1.2 a+b two layers › PHP14-like › PHP14-like › PHP14-like › Ocnus 0.81 72.0 5.31e-01 100.0% 41.7%
3941732 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.78 64.0 6.31e-01 100.0% 84.0%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.76 66.0 6.18e-01 100.0% 91.4%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.75 59.0 5.95e-01 100.0% 91.1%
3284380 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.74 63.0 5.54e-01 97.8% 92.9%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.73 61.0 5.85e-01 100.0% 92.7%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 62.0 5.78e-01 100.0% 86.7%
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.72 62.0 5.78e-01 100.0% 89.8%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.72 60.0 5.34e-01 100.0% 74.3%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 60.0 5.20e-01 100.0% 69.3%
4962335 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.70 60.0 5.39e-01 100.0% 73.8%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.67 53.0 5.28e-01 100.0% 90.0%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 56.0 5.10e-01 100.0% 80.0%
4421202 327.6.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane 0.66 54.0 3.86e-01 100.0% 72.3%
3222254 304.9.1.40 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › BRAP2 0.65 56.0 4.17e-01 100.0% 67.2%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.63 51.0 4.53e-01 100.0% 64.0%
4033537 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.62 51.0 3.32e-01 100.0% 23.5%
3184485 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.62 50.0 3.91e-01 100.0% 40.7%
3499101 3346.1.1.5 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.61 48.0 3.42e-01 100.0% 26.4%
3222162 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.61 50.0 3.97e-01 100.0% 50.9%
3484366 284.1.2.1 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.60 49.0 4.02e-01 100.0% 91.0%
4056781 304.24.1.4 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.60 49.0 3.59e-01 100.0% 49.3%
3734833 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.60 46.0 4.00e-01 100.0% 95.6%
3672250 207.1.1.116 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.60 46.0 3.21e-01 100.0% 22.6%
4667643 240.2.1.0 a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit 0.60 49.0 3.76e-01 100.0% 83.3%
4427418 11.1.1.1229 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27268 0.58 45.0 3.59e-01 87.0% 90.5%
4546109 240.2.1.0 a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Insert subdomain of RNA polymerase alpha subunit › Insert subdomain of RNA polymerase alpha subunit 0.58 48.0 3.77e-01 100.0% 89.1%
4010783 223.8.1.2 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › CHASE8 0.57 39.0 3.15e-01 76.1% 85.5%
4998374 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 44.0 3.30e-01 89.1% 33.6%
4261500 1.1.2.22 beta barrels › cradle loop barrel › RIFT-related › double psi › IML1_N_fung 0.56 50.0 3.85e-01 100.0% 60.0%
3600134 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 42.0 3.58e-01 97.8% 46.0%
5072525 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 3.03e-01 89.1% 29.0%
4146398 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.55 41.0 2.92e-01 89.1% 24.7%
5045803 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 41.0 3.08e-01 89.1% 29.5%
5050481 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 39.0 3.01e-01 87.0% 92.1%
3915206 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.54 44.0 3.11e-01 100.0% 64.6%
3628286 223.2.1.33 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.54 39.0 2.96e-01 82.6% 71.5%
3576143 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.54 44.0 3.48e-01 100.0% 56.4%
5046689 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 2.95e-01 89.1% 29.0%
4410522 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.54 41.0 2.96e-01 89.1% 26.1%
3846437 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.63e-01 100.0% 48.4%
2006900 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.53 42.0 3.45e-01 100.0% 44.2%
3620456 221.1.1.64 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N 0.53 42.0 3.37e-01 100.0% 40.9%
3919667 269.1.1.3 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.53 42.0 2.85e-01 100.0% 48.1%
5072371 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 40.0 3.15e-01 84.8% 97.0%
3966635 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 2.79e-01 87.0% 25.9%
4976020 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 2.76e-01 89.1% 25.7%
3948638 223.8.1.4 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › GAPES3 0.52 35.0 2.64e-01 78.3% 31.9%
3312666 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 41.0 3.75e-01 100.0% 67.1%
3656089 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.50 39.0 2.48e-01 100.0% 89.1%
3333290 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.50 42.0 2.90e-01 100.0% 42.8%