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KJ019089.1__AIX28401.1__Syn7803US23_57__00057

Bact-Vir

KJ019089.1__AIX28401.1__Syn7803US23_57__00057

Identity

Accession:
KJ019089 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-96
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.78 47.0 3.23e-01 78.0% 18.9%
6u26A01 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.75 40.0 3.48e-01 72.9% 35.2%
3dmqA07 3.30.360.80 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › 0.74 57.0 5.32e-01 84.7% 98.6%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.72 45.0 3.54e-01 84.7% 31.1%
3nrvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 42.0 3.24e-01 72.9% 27.9%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.65 49.0 4.73e-01 84.7% 91.3%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.64 48.0 3.63e-01 79.7% 44.1%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 46.0 4.40e-01 79.7% 83.3%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 47.0 3.10e-01 79.7% 41.5%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 55.0 3.61e-01 100.0% 78.5%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.63 45.0 3.71e-01 79.7% 62.9%
3ca8A01 1.10.3620.10 Mainly Alpha › Orthogonal Bundle › YdcF fold › YdcF like domain 0.62 51.0 4.33e-01 96.6% 63.2%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 45.0 3.37e-01 79.7% 67.7%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.62 48.0 3.81e-01 88.1% 62.8%
7z2bK01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.61 43.0 2.78e-01 76.3% 82.2%
3cq4A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 46.0 3.61e-01 83.1% 58.6%
1ecsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 48.0 3.84e-01 88.1% 67.5%
4mymA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 44.0 3.37e-01 81.4% 73.5%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 44.0 3.47e-01 81.4% 62.9%
3dodB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 48.0 3.48e-01 91.5% 57.1%
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.58 44.0 3.69e-01 84.7% 92.0%
7wrgB01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.58 50.0 3.16e-01 96.6% 42.7%
6sc4A00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.58 48.0 3.43e-01 93.2% 70.1%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.57 40.0 3.71e-01 74.6% 57.1%
2ctkA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 50.0 4.16e-01 100.0% 76.9%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.57 46.0 4.03e-01 88.1% 84.1%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.57 45.0 4.14e-01 86.4% 69.7%
1p9oA00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.57 42.0 2.77e-01 79.7% 79.9%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.57 50.0 3.48e-01 100.0% 30.4%
1t82A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 44.0 3.36e-01 84.7% 62.0%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 42.0 3.31e-01 84.7% 38.2%
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.56 42.0 2.81e-01 78.0% 59.0%
3ct8A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 47.0 3.74e-01 98.3% 72.2%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 43.0 3.26e-01 84.7% 38.4%
3kenA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.56 47.0 2.99e-01 96.6% 31.5%
3fryA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.86e-01 79.7% 68.8%
1nkiA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 45.0 3.55e-01 93.2% 59.0%
1b7yB01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.55 43.0 4.07e-01 84.7% 71.4%
2zogA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 45.0 2.98e-01 100.0% 94.4%
2qntA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 44.0 3.58e-01 89.8% 71.6%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.55 38.0 3.51e-01 74.6% 56.2%
1k3sA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 46.0 3.84e-01 96.6% 96.3%
2kinA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.54 40.0 2.70e-01 81.4% 20.2%
2cu2A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 41.0 2.52e-01 81.4% 28.7%
3a8uX01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 41.0 3.07e-01 86.4% 53.8%
6njeA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.53 40.0 2.61e-01 84.7% 18.5%
1sqgA03 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.52 37.0 3.72e-01 79.7% 75.9%
3sk2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 43.0 3.38e-01 93.2% 65.9%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 43.0 3.78e-01 94.9% 65.9%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 37.0 2.86e-01 79.7% 35.3%
3bzvB00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.50 34.0 3.09e-01 71.2% 90.0%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3606601 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.75 50.0 3.02e-01 81.4% 10.8%
4983181 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 54.0 4.30e-01 79.7% 84.2%
3624164 331.23.1.8 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › Gemin6_C 0.69 51.0 4.82e-01 79.7% 88.6%
5062306 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.69 49.0 4.29e-01 76.3% 71.1%
3593362 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.68 53.0 4.71e-01 84.7% 58.8%
3874350 330.1.1.17 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm_Ferlin 0.68 50.0 4.05e-01 79.7% 65.2%
3574741 3006.1.1.2 a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Gemin6_C 0.68 50.0 4.88e-01 79.7% 93.8%
3350669 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.67 60.0 5.66e-01 100.0% 100.0%
1714462 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.65 48.0 4.29e-01 84.7% 53.9%
2724208 7577.1.1.2 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 0.65 38.0 2.88e-01 83.1% 24.3%
3708114 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.65 48.0 3.98e-01 79.7% 73.3%
3486720 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.64 50.0 3.08e-01 84.7% 80.3%
3722558 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.64 47.0 4.29e-01 79.7% 88.7%
4103373 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.63 45.0 4.68e-01 76.3% 85.5%
3781457 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.63 46.0 4.33e-01 79.7% 92.0%
4026519 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.63 56.0 4.29e-01 100.0% 78.5%
4929392 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 46.0 4.06e-01 79.7% 68.9%
4016576 7577.1.1.1 a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.62 49.0 3.17e-01 88.1% 75.1%
3277423 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.62 47.0 3.54e-01 83.1% 43.3%
3988872 211.1.1.8 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › CppA_N 0.61 42.0 3.99e-01 71.2% 68.6%
4999909 101.1.9.134 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.61 39.0 4.07e-01 74.6% 70.9%
4504505 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.60 43.0 4.36e-01 78.0% 98.3%
3198655 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 42.0 4.08e-01 74.6% 80.0%
1713024 211.1.1.24 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N 0.60 41.0 4.02e-01 72.9% 82.8%
4980935 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.59 45.0 3.03e-01 84.7% 40.0%
5061708 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.58 44.0 4.01e-01 83.1% 77.1%
4947558 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.58 43.0 3.76e-01 79.7% 71.1%
5036572 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.58 48.0 4.49e-01 93.2% 74.7%
3496312 211.1.1.17 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C 0.57 40.0 4.12e-01 72.9% 83.6%
4958554 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.56 51.0 3.36e-01 100.0% 66.0%
3988822 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 38.0 3.78e-01 72.9% 70.8%
3394256 211.1.1.17 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C 0.56 39.0 4.02e-01 72.9% 83.6%
3414351 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 45.0 3.30e-01 94.9% 45.7%
3793760 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 38.0 3.80e-01 72.9% 80.0%
3601464 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 49.0 2.95e-01 100.0% 33.7%
4534744 6051.5.1.2 alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 3 N-terminal docking domain › Class 3 N-terminal docking domain › PF27494 0.54 40.0 3.80e-01 79.7% 72.9%
4032136 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 39.0 3.71e-01 78.0% 68.6%
3288258 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.53 45.0 3.53e-01 94.9% 70.8%
3597411 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 47.0 2.85e-01 98.3% 29.6%
3788876 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.53 49.0 2.93e-01 100.0% 23.6%
3663293 304.12.1.10 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › ABCA12_C 0.52 39.0 3.72e-01 81.4% 88.6%
3928208 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.52 38.0 3.55e-01 79.7% 66.7%
3267720 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 38.0 3.32e-01 81.4% 83.3%
5050596 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 37.0 3.53e-01 79.7% 70.0%