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KJ019128.1__AIX38008.1__Syn7803US88_7__00007
Bact-VirKJ019128.1__AIX38008.1__Syn7803US88_7__00007
Identity
- Accession:
- KJ019128 ↗
- Kingdom:
- phage
Quality
47.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Namakavirus›
Synechococcus_phage_S-MbCM6
TaxID: 3126011
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 573-783
Domain cluster:
rep: OP947166.1__WBC28587.1__TPMD04_36__00036__D165-348
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xovA01 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.73 | 58.0 | 6.34e-01 | 90.0% | 97.2% |
| 1jwqA00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.73 | 59.0 | 6.40e-01 | 91.0% | 97.8% |
| 3qayA00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.73 | 59.0 | 6.32e-01 | 89.6% | 96.7% |
| 4rn7A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.73 | 61.0 | 6.45e-01 | 91.9% | 97.3% |
| 4lq6A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.69 | 61.0 | 6.13e-01 | 91.9% | 98.6% |
| 8c2oB01 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.69 | 61.0 | 5.99e-01 | 91.9% | 99.6% |
| 8c0jA01 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.68 | 59.0 | 6.17e-01 | 91.5% | 99.0% |
| 3ne8A00 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.66 | 59.0 | 5.78e-01 | 93.8% | 97.8% |
| 4ycsA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 38.0 | 4.90e-01 | 90.5% | 96.7% |
| 3d8uB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 36.0 | 4.75e-01 | 91.0% | 95.0% |
| 3l49A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.65 | 38.0 | 4.69e-01 | 91.5% | 92.2% |
| 3g1wA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 38.0 | 4.53e-01 | 91.5% | 84.1% |
| 3bedA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.64 | 34.0 | 4.18e-01 | 91.9% | 80.8% |
| 4kvfA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 38.0 | 4.26e-01 | 91.5% | 75.0% |
| 1efaA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 36.0 | 4.58e-01 | 91.5% | 92.1% |
| 3hs3A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 35.0 | 4.45e-01 | 91.5% | 89.7% |
| 3k2kA02 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.63 | 54.0 | 5.02e-01 | 91.5% | 83.0% |
| 2h3hA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 37.0 | 4.33e-01 | 91.9% | 82.4% |
| 5c5dD00 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 38.0 | 4.34e-01 | 91.9% | 80.5% |
| 3h75A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 37.0 | 3.96e-01 | 91.5% | 66.1% |
| 4j07A00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.62 | 40.0 | 4.59e-01 | 91.9% | 88.8% |
| 4ja0D02 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 37.0 | 4.67e-01 | 91.9% | 97.7% |
| 3d02A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 36.0 | 4.22e-01 | 91.5% | 81.6% |
| 1yqeA01 | 3.40.630.50 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like | 0.60 | 49.0 | 5.26e-01 | 91.5% | 97.3% |
| 1abeA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 36.0 | 4.40e-01 | 91.9% | 91.3% |
| 2yhaA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 37.0 | 4.40e-01 | 91.0% | 92.1% |
| 4twgC00 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.59 | 41.0 | 4.66e-01 | 93.8% | 94.9% |
| 3tcrA00 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.58 | 41.0 | 4.65e-01 | 92.9% | 96.2% |
| 6cv6D00 | 3.40.50.9100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II | 0.58 | 38.0 | 4.58e-01 | 90.0% | 97.9% |
| 2qvpC00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.58 | 50.0 | 4.62e-01 | 91.9% | 77.3% |
| 5v8sA02 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.57 | 39.0 | 4.55e-01 | 88.6% | 96.6% |
| 3odpA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.57 | 37.0 | 4.00e-01 | 90.5% | 75.8% |
| 2eggB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.56 | 35.0 | 4.09e-01 | 89.6% | 86.7% |
| 3vzbB01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.56 | 35.0 | 4.16e-01 | 91.5% | 91.6% |
| 3nm6B00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.55 | 47.0 | 4.63e-01 | 90.0% | 99.1% |
| 4mchA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.55 | 47.0 | 4.53e-01 | 91.9% | 90.9% |
| 1b0zA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.53 | 37.0 | 3.61e-01 | 90.0% | 64.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 10179 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.73 | 58.0 | 6.28e-01 | 90.0% | 95.6% |
| 1406254 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.73 | 61.0 | 6.45e-01 | 91.9% | 97.3% |
| 3962927 | 2011.1.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases | 0.69 | 60.0 | 6.10e-01 | 91.0% | 99.0% |
| 3954478 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.69 | 61.0 | 6.08e-01 | 92.9% | 96.4% |
| 4378040 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.69 | 60.0 | 5.85e-01 | 91.5% | 97.0% |
| 3947578 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.68 | 60.0 | 5.70e-01 | 91.0% | 93.8% |
| 4005299 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.67 | 59.0 | 5.43e-01 | 91.5% | 83.4% |
| 139841 | 2011.1.1.5 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Amidase_3 | 0.66 | 59.0 | 5.79e-01 | 93.8% | 97.8% |
| 4989506 | 2011.1.1.18 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › AstE_AspA_cat | 0.65 | 52.0 | 5.53e-01 | 91.0% | 92.6% |
| 4461164 | 2011.2.1.18 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › DUF1256 | 0.64 | 44.0 | 4.84e-01 | 91.0% | 85.9% |
| 4029632 | 7526.1.1.1 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › IF-2 | 0.64 | 34.0 | 4.34e-01 | 91.5% | 88.3% |
| 3999635 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.63 | 37.0 | 4.51e-01 | 91.0% | 88.9% |
| 5043071 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.63 | 44.0 | 4.90e-01 | 90.0% | 88.8% |
| 3550502 | 2007.1.9.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) › AIRC | 0.62 | 38.0 | 4.31e-01 | 91.9% | 80.0% |
| 5011729 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.62 | 53.0 | 4.92e-01 | 90.5% | 76.0% |
| 2049957 | 2007.1.14.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA | 0.61 | 33.0 | 4.19e-01 | 89.6% | 87.8% |
| 3587067 | 2007.1.4.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat | 0.61 | 35.0 | 4.48e-01 | 91.0% | 96.7% |
| 3199856 | 2011.4.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Peptidase_C15 | 0.61 | 53.0 | 5.25e-01 | 92.4% | 97.8% |
| 3954412 | 2007.1.4.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat | 0.60 | 36.0 | 4.52e-01 | 91.9% | 97.7% |
| 3288213 | 2007.1.4.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat | 0.59 | 35.0 | 4.37e-01 | 89.1% | 93.8% |
| 1627713 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.59 | 30.0 | 4.17e-01 | 78.2% | 100.0% |
| 3279619 | 2007.2.2.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphotyrosine protein phosphatases I-like › LMWPc | 0.59 | 36.0 | 4.38e-01 | 91.0% | 91.4% |
| 4017395 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.58 | 40.0 | 4.31e-01 | 92.4% | 80.6% |
| 4946262 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.57 | 42.0 | 4.59e-01 | 93.4% | 92.4% |
| 3213312 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.57 | 38.0 | 4.13e-01 | 92.9% | 80.0% |
| 5011400 | 7540.1.1.1 ↗ | a/b three-layered sandwiches › Bacterial fluorinating enzyme, N-terminal domain › Bacterial fluorinating enzyme, N-terminal domain › Bacterial fluorinating enzyme, N-terminal domain › SAM_HAT_N | 0.57 | 38.0 | 4.31e-01 | 90.0% | 89.4% |
| 4947056 | 7540.1.1.1 ↗ | a/b three-layered sandwiches › Bacterial fluorinating enzyme, N-terminal domain › Bacterial fluorinating enzyme, N-terminal domain › Bacterial fluorinating enzyme, N-terminal domain › SAM_HAT_N | 0.56 | 38.0 | 4.29e-01 | 90.0% | 89.4% |
| 3237561 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.56 | 35.0 | 3.83e-01 | 91.9% | 75.3% |
| 3983855 | 7540.1.1.1 ↗ | a/b three-layered sandwiches › Bacterial fluorinating enzyme, N-terminal domain › Bacterial fluorinating enzyme, N-terminal domain › Bacterial fluorinating enzyme, N-terminal domain › SAM_HAT_N | 0.55 | 38.0 | 4.24e-01 | 91.0% | 89.1% |
| 3972280 | 2007.1.4.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain | 0.54 | 40.0 | 4.40e-01 | 91.5% | 93.1% |
D2
medium
residues 20-82_118-232
D3
medium
residues 321-452_488-511
D4
medium
residues 453-487_512-566