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KJ019128.1__AIX38078.1__Syn7803US88_77__00077
Bact-VirKJ019128.1__AIX38078.1__Syn7803US88_77__00077
Identity
- Accession:
- KJ019128 ↗
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Namakavirus›
Synechococcus_phage_S-MbCM6
TaxID: 3126011
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-71
Domain cluster:
rep: IMGVR_UViG_3300017746_000056-3300017746-Ga0181389_10000689__D1-62
D2
medium
residues 72-107_619-674
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__01028__D28-123
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b43A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 45.0 | 4.17e-01 | 87.0% | 66.1% |
| 3tg9A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 39.0 | 2.71e-01 | 77.2% | 91.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4439182 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.59 | 49.0 | 4.50e-01 | 89.1% | 91.7% |
| 3892374 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 33.0 | 3.38e-01 | 91.3% | 58.9% |
| 4968761 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 35.0 | 3.81e-01 | 91.3% | 77.3% |
| 4987765 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 33.0 | 3.59e-01 | 91.3% | 73.3% |
| 4508115 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.52 | 31.0 | 3.33e-01 | 84.8% | 69.3% |
| 5056600 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 30.0 | 2.74e-01 | 73.9% | 43.3% |
D3
medium
residues 218-295
Domain cluster:
rep: RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00468__D116-186
CATH (60)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l3aA03 | 2.60.40.3890 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.71 | 60.0 | 5.34e-01 | 93.6% | 84.8% |
| 6ea2A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.67 | 56.0 | 4.20e-01 | 93.6% | 38.0% |
| 4igbB02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 54.0 | 4.50e-01 | 93.6% | 58.0% |
| 5zi7A01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.65 | 54.0 | 4.09e-01 | 93.6% | 38.4% |
| 2jjsC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 53.0 | 4.72e-01 | 93.6% | 85.2% |
| 8dhaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 48.0 | 4.72e-01 | 83.3% | 88.5% |
| 1cgtA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 52.0 | 5.05e-01 | 92.3% | 82.6% |
| 3cwiA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.62 | 47.0 | 4.99e-01 | 91.0% | 92.6% |
| 1i1rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 52.0 | 4.80e-01 | 93.6% | 80.0% |
| 3d3aA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 47.0 | 4.00e-01 | 97.4% | 48.5% |
| 4madA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 46.0 | 3.93e-01 | 96.2% | 47.8% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 50.0 | 4.28e-01 | 91.0% | 81.4% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 49.0 | 4.53e-01 | 92.3% | 96.2% |
| 4e8dA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 47.0 | 3.93e-01 | 97.4% | 47.8% |
| 4kc3B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 50.0 | 4.73e-01 | 93.6% | 76.8% |
| 5k6uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 51.0 | 4.87e-01 | 94.9% | 83.3% |
| 2jwpA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.60 | 49.0 | 3.85e-01 | 92.3% | 95.4% |
| 2petA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 49.0 | 4.34e-01 | 93.6% | 79.3% |
| 5oyjC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 49.0 | 4.60e-01 | 94.9% | 76.8% |
| 1cgtA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 44.0 | 4.23e-01 | 93.6% | 69.1% |
| 3fn9C04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 4.40e-01 | 93.6% | 75.0% |
| 4depC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 48.0 | 4.42e-01 | 92.3% | 73.5% |
| 1e5rB01 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.58 | 41.0 | 3.24e-01 | 96.2% | 33.7% |
| 3h6xB00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.57 | 49.0 | 4.25e-01 | 100.0% | 76.9% |
| 1tq5A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 47.0 | 4.20e-01 | 94.9% | 64.8% |
| 4devD01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 45.0 | 3.96e-01 | 94.9% | 56.0% |
| 5wy8B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 46.0 | 4.33e-01 | 92.3% | 75.5% |
| 1bvp102 | 2.60.120.170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 46.0 | 3.99e-01 | 94.9% | 94.7% |
| 4aeeA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 4.33e-01 | 94.9% | 75.3% |
| 7cymA03 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.56 | 46.0 | 4.49e-01 | 94.9% | 83.9% |
| 3o3uN03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 4.16e-01 | 94.9% | 82.0% |
| 1cs6A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 4.21e-01 | 94.9% | 76.7% |
| 7ok5A06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 4.47e-01 | 93.6% | 85.1% |
| 5nn3A05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 44.0 | 3.75e-01 | 88.5% | 53.8% |
| 3skvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 46.0 | 3.76e-01 | 94.9% | 90.3% |
| 1rgxA02 | 2.60.40.4230 | Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain | 0.55 | 36.0 | 3.89e-01 | 94.9% | 82.8% |
| 4aw7A03 | 2.60.120.1200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 47.0 | 4.09e-01 | 96.2% | 91.8% |
| 2cknA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 4.30e-01 | 93.6% | 76.8% |
| 1bpvA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 4.24e-01 | 97.4% | 74.0% |
| 4fo9A01 | 2.60.120.780 | Mainly Beta › Sandwich › Jelly Rolls › PINIT domain | 0.55 | 46.0 | 3.83e-01 | 96.2% | 88.2% |
| 4d7yA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 45.0 | 3.88e-01 | 94.9% | 97.7% |
| 5y5qC00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.55 | 46.0 | 3.96e-01 | 100.0% | 75.0% |
| 4u7mA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 45.0 | 4.29e-01 | 93.6% | 78.7% |
| 1ahsA00 | 2.60.120.170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 45.0 | 3.93e-01 | 94.9% | 75.4% |
| 3wndA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 41.0 | 3.88e-01 | 82.1% | 88.3% |
| 3i2dA01 | 2.60.120.780 | Mainly Beta › Sandwich › Jelly Rolls › PINIT domain | 0.54 | 45.0 | 3.67e-01 | 94.9% | 70.3% |
| 3c7fA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 45.0 | 3.79e-01 | 96.2% | 90.8% |
| 4qawH03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 46.0 | 3.96e-01 | 100.0% | 94.8% |
| 1zunB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 43.0 | 4.15e-01 | 91.0% | 90.0% |
| 8ediA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 4.20e-01 | 94.9% | 81.3% |
| 5oj2A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 4.13e-01 | 94.9% | 80.5% |
| 2gbmA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 43.0 | 4.33e-01 | 93.6% | 92.6% |
| 1sq4A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 45.0 | 3.93e-01 | 100.0% | 65.9% |
| 3vsmA03 | 2.60.40.4340 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 3.47e-01 | 74.4% | 73.4% |
| 7ehgC01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 43.0 | 3.76e-01 | 97.4% | 66.7% |
| 3pfnC02 | 2.60.200.30 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 | 0.52 | 44.0 | 3.64e-01 | 93.6% | 78.8% |
| 4hsaF02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.51 | 43.0 | 3.97e-01 | 97.4% | 82.9% |
| 1nkgA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 41.0 | 2.97e-01 | 93.6% | 57.4% |
| 4naoA00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.50 | 42.0 | 2.93e-01 | 94.9% | 40.4% |
| 1sefA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 42.0 | 3.76e-01 | 97.4% | 68.1% |
ECOD (79)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3604177 | 3386.2.1.0 ↗ | beta sandwiches › gp9 C-terminal domain-like › gp10 domain 2 and domain 3 › gp10 domain 2 and domain 3 | 0.79 | 64.0 | 6.76e-01 | 89.7% | 97.1% |
| 5012858 | 11.1.1.33 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arch_flagellin | 0.71 | 60.0 | 4.96e-01 | 92.3% | 71.1% |
| 3270576 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.69 | 56.0 | 5.64e-01 | 92.3% | 87.5% |
| 5018861 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 58.0 | 5.25e-01 | 93.6% | 85.7% |
| 1501392 | 11.1.1.56 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_X2 | 0.67 | 57.0 | 5.32e-01 | 92.3% | 84.4% |
| 4942095 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 48.0 | 5.02e-01 | 80.8% | 98.6% |
| 3266837 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 52.0 | 4.96e-01 | 92.3% | 88.4% |
| 3580256 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.64 | 53.0 | 5.00e-01 | 93.6% | 75.8% |
| 5018292 | 11.1.1.171 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 | 0.63 | 54.0 | 4.69e-01 | 96.2% | 75.8% |
| 3557833 | 11.1.1.86 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Lep_receptor_Ig | 0.62 | 52.0 | 4.89e-01 | 92.3% | 84.2% |
| 4959774 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 51.0 | 4.84e-01 | 94.9% | 76.3% |
| 3255717 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 51.0 | 5.00e-01 | 92.3% | 83.5% |
| 3247140 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.61 | 44.0 | 3.89e-01 | 92.3% | 50.0% |
| 3027221 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 50.0 | 4.75e-01 | 92.3% | 85.1% |
| 3889867 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.61 | 51.0 | 4.84e-01 | 94.9% | 80.0% |
| 3589023 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.61 | 50.0 | 4.26e-01 | 93.6% | 58.5% |
| 3392941 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 49.0 | 4.66e-01 | 91.0% | 86.3% |
| 3909323 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.61 | 50.0 | 4.78e-01 | 94.9% | 80.0% |
| 3899631 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 50.0 | 3.66e-01 | 94.9% | 32.6% |
| 3747206 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.60 | 46.0 | 4.59e-01 | 85.9% | 82.5% |
| 3778666 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.59 | 47.0 | 4.28e-01 | 92.3% | 64.8% |
| 3655301 | 1.1.8.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › RIBIOP_C | 0.59 | 44.0 | 3.88e-01 | 80.8% | 71.7% |
| 3909670 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 47.0 | 4.43e-01 | 93.6% | 72.6% |
| 3646282 | 12.6.1.4 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro127M | 0.59 | 47.0 | 4.15e-01 | 89.7% | 59.1% |
| 3497288 | 12.5.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 | 0.59 | 51.0 | 4.14e-01 | 98.7% | 63.2% |
| 3910021 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 49.0 | 4.51e-01 | 94.9% | 71.4% |
| 3885238 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.59 | 49.0 | 4.75e-01 | 94.9% | 82.2% |
| 3793469 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 48.0 | 4.65e-01 | 94.9% | 80.0% |
| 3848868 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.59 | 47.0 | 4.60e-01 | 92.3% | 82.4% |
| 3400003 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 46.0 | 4.23e-01 | 94.9% | 63.6% |
| 4108781 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 49.0 | 4.51e-01 | 92.3% | 76.0% |
| 3008972 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.58 | 44.0 | 3.81e-01 | 83.3% | 75.2% |
| 3856313 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.58 | 48.0 | 4.26e-01 | 93.6% | 65.2% |
| 4502432 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.58 | 44.0 | 4.29e-01 | 89.7% | 73.3% |
| 3518212 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 47.0 | 4.54e-01 | 94.9% | 80.0% |
| 4446048 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.57 | 44.0 | 4.16e-01 | 92.3% | 67.0% |
| 5024153 | 1.1.8.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III | 0.57 | 42.0 | 3.92e-01 | 79.5% | 78.0% |
| 3917787 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.57 | 46.0 | 4.54e-01 | 94.9% | 83.5% |
| 3905972 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 44.0 | 4.23e-01 | 91.0% | 73.3% |
| 3388491 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 48.0 | 4.53e-01 | 94.9% | 78.9% |
| 4221261 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 46.0 | 4.01e-01 | 93.6% | 55.4% |
| 3557278 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.57 | 46.0 | 4.49e-01 | 92.3% | 82.2% |
| 3574670 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.57 | 47.0 | 4.22e-01 | 93.6% | 65.5% |
| 3880054 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 41.0 | 4.25e-01 | 80.8% | 81.3% |
| None | — | 0.57 | 45.0 | 4.02e-01 | 91.0% | 60.0% | |
| 3576703 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.57 | 47.0 | 3.78e-01 | 94.9% | 53.9% |
| 4927085 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.56 | 46.0 | 4.56e-01 | 92.3% | 87.1% |
| 4114688 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 47.0 | 4.12e-01 | 94.9% | 60.8% |
| 3396980 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.56 | 46.0 | 4.45e-01 | 93.6% | 80.0% |
| 3518238 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 46.0 | 4.18e-01 | 93.6% | 76.4% |
| 3894239 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.56 | 44.0 | 4.18e-01 | 93.6% | 72.6% |
| 3774967 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.56 | 45.0 | 4.37e-01 | 96.2% | 80.0% |
| 3914223 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.56 | 45.0 | 3.87e-01 | 94.9% | 54.6% |
| 4482075 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.56 | 43.0 | 4.03e-01 | 93.6% | 67.0% |
| 3572142 | 11.1.1.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta | 0.56 | 47.0 | 4.27e-01 | 96.2% | 81.8% |
| 4137388 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.56 | 46.0 | 4.28e-01 | 93.6% | 73.0% |
| 3869442 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 46.0 | 4.25e-01 | 94.9% | 86.7% |
| 3881805 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 44.0 | 4.01e-01 | 93.6% | 63.6% |
| 3930866 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 47.0 | 4.46e-01 | 97.4% | 82.1% |
| 3515862 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.55 | 45.0 | 4.38e-01 | 93.6% | 83.3% |
| 3570874 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.55 | 45.0 | 4.21e-01 | 92.3% | 74.0% |
| 3622817 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 46.0 | 4.36e-01 | 93.6% | 76.8% |
| 5047972 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 44.0 | 4.17e-01 | 89.7% | 83.2% |
| 3994331 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.55 | 44.0 | 4.29e-01 | 92.3% | 80.0% |
| 1262 | 10.5.1.2 ↗ | beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain › Orbi_VP7 | 0.54 | 45.0 | 3.93e-01 | 94.9% | 75.4% |
| 3842312 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.54 | 42.0 | 4.11e-01 | 94.9% | 76.7% |
| 3891336 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 4.27e-01 | 93.6% | 81.1% |
| 4258745 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.54 | 43.0 | 3.63e-01 | 94.9% | 49.0% |
| 3200676 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 45.0 | 3.55e-01 | 96.2% | 63.3% |
| 5015359 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.54 | 43.0 | 4.24e-01 | 92.3% | 92.9% |
| 4960108 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 43.0 | 4.44e-01 | 93.6% | 100.0% |
| 1714466 | 10.26.1.1 ↗ | beta sandwiches › jelly-roll › Histone H3 binding protein ORF158L › Histone H3 binding protein ORF158L › Pox_C7_F8A | 0.53 | 43.0 | 3.57e-01 | 91.0% | 48.7% |
| 3266732 | 10.32.1.73 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 | 0.53 | 43.0 | 3.52e-01 | 96.2% | 45.8% |
| 4941934 | 11.1.1.288 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_13 | 0.53 | 44.0 | 4.13e-01 | 94.9% | 79.0% |
| 3244603 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.53 | 44.0 | 3.63e-01 | 94.9% | 58.0% |
| 3418004 | 10.32.1.38 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like | 0.53 | 44.0 | 3.55e-01 | 93.6% | 91.6% |
| 5023644 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 35.0 | 3.45e-01 | 73.1% | 100.0% |
| 3385468 | 3019.1.1.0 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain | 0.51 | 41.0 | 3.11e-01 | 93.6% | 92.3% |
| 5038824 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.50 | 40.0 | 3.95e-01 | 93.6% | 91.8% |
D4
medium
residues 502-594
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wanA01 | 2.60.40.1130 | Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain | 0.63 | 50.0 | 4.99e-01 | 95.7% | 85.3% |
| 3vmnA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 51.0 | 4.89e-01 | 96.8% | 84.7% |
| 5a2fA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 53.0 | 5.00e-01 | 100.0% | 85.7% |
| 5wy8B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 50.0 | 4.73e-01 | 98.9% | 88.4% |
| 3okxB00 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.56 | 46.0 | 3.99e-01 | 92.5% | 79.2% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.55 | 45.0 | 4.66e-01 | 92.5% | 96.6% |
| 5dzxA04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.55 | 44.0 | 4.34e-01 | 100.0% | 80.8% |
| 7sz8A01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.55 | 45.0 | 4.50e-01 | 97.8% | 87.9% |
| 1kxgA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 46.0 | 4.10e-01 | 97.8% | 77.8% |
| 3k5rA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.54 | 47.0 | 4.43e-01 | 98.9% | 86.3% |
| 5t9pA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 36.0 | 3.67e-01 | 79.6% | 71.9% |
| 1jhnA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 45.0 | 3.52e-01 | 100.0% | 92.2% |
| 4nzfD02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 40.0 | 4.05e-01 | 80.6% | 85.6% |
| 6rarI02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 34.0 | 3.52e-01 | 93.5% | 68.5% |
| 1tuhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 3.78e-01 | 87.1% | 80.9% |
| 4c7qA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 37.0 | 3.88e-01 | 80.6% | 81.4% |
| 2zoeA00 | 2.170.15.20 | Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › | 0.52 | 36.0 | 3.07e-01 | 73.1% | 97.6% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 3.98e-01 | 95.7% | 81.4% |
| 3n6yA01 | 2.60.40.2390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 44.0 | 4.17e-01 | 97.8% | 89.3% |
| 4aeeA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.64e-01 | 91.4% | 65.0% |
| 1lshA04 | 2.20.80.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 | 0.51 | 36.0 | 2.69e-01 | 73.1% | 48.2% |
| 4rlzA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.51 | 42.0 | 4.07e-01 | 95.7% | 99.1% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.51 | 40.0 | 4.19e-01 | 91.4% | 100.0% |
| 3bs9A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 36.0 | 3.78e-01 | 80.6% | 87.3% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4985684 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 51.0 | 5.15e-01 | 95.7% | 85.3% |
| 4214292 | 11.1.5.60 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › FimA | 0.59 | 49.0 | 4.05e-01 | 95.7% | 92.2% |
| 3245905 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.58 | 50.0 | 4.75e-01 | 97.8% | 85.2% |
| 1714453 | 11.21.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like | 0.58 | 49.0 | 4.92e-01 | 96.8% | 94.7% |
| 3985549 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 48.0 | 4.49e-01 | 96.8% | 98.3% |
| 3914722 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 40.0 | 4.33e-01 | 78.5% | 93.3% |
| 3583804 | 11.1.5.94 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 | 0.56 | 48.0 | 3.98e-01 | 97.8% | 50.6% |
| 4956967 | 304.59.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 | 0.56 | 40.0 | 4.13e-01 | 84.9% | 77.8% |
| 4941305 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 47.0 | 4.57e-01 | 97.8% | 98.2% |
| 3891337 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.56 | 48.0 | 4.25e-01 | 97.8% | 69.7% |
| 151167 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.56 | 45.0 | 3.84e-01 | 88.2% | 79.5% |
| 4945415 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.56 | 47.0 | 4.23e-01 | 98.9% | 96.4% |
| 5043081 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 47.0 | 4.09e-01 | 97.8% | 94.0% |
| 5005568 | 304.28.1.38 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › CAA_C | 0.54 | 43.0 | 3.58e-01 | 87.1% | 78.2% |
| 3224991 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 47.0 | 4.48e-01 | 98.9% | 84.5% |
| 3680041 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.54 | 44.0 | 4.07e-01 | 93.5% | 80.0% |
| 3598105 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.53 | 39.0 | 3.65e-01 | 80.6% | 95.8% |
| 4985048 | 304.126.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C | 0.52 | 33.0 | 3.48e-01 | 82.8% | 72.5% |
| 3595057 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 40.0 | 3.36e-01 | 84.9% | 57.1% |
| 4625449 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 43.0 | 4.35e-01 | 94.6% | 95.6% |
| 4487146 | 244.1.1.33 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › PF30157 | 0.51 | 40.0 | 3.72e-01 | 89.2% | 71.2% |
D5
medium
residues 738-814_879-907
Domain cluster:
rep: KU873925.1__AND75135.1__pf16_212__00211__D127-217_359-371
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1v5vA03 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.70 | 47.0 | 5.39e-01 | 91.5% | 97.3% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.66 | 46.0 | 4.93e-01 | 93.4% | 84.6% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.64 | 41.0 | 4.67e-01 | 85.8% | 88.6% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 39.0 | 4.40e-01 | 95.3% | 80.5% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.63 | 42.0 | 4.10e-01 | 82.1% | 61.5% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 45.0 | 3.98e-01 | 75.5% | 71.8% |
| 4ic5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 46.0 | 4.64e-01 | 87.7% | 78.8% |
| 5choF00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 45.0 | 3.92e-01 | 75.5% | 73.1% |
| 4xhyA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 45.0 | 3.90e-01 | 75.5% | 69.6% |
| 4f07E00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 45.0 | 3.99e-01 | 75.5% | 71.1% |
| 2p5zX01 | 2.30.110.50 | Mainly Beta › Roll › Pnp Oxidase; Chain A › | 0.61 | 41.0 | 3.54e-01 | 79.2% | 43.4% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.60 | 42.0 | 4.81e-01 | 97.2% | 100.0% |
| 1i0rA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 43.0 | 3.74e-01 | 75.5% | 71.4% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 45.0 | 3.98e-01 | 82.1% | 72.4% |
| 2r0xA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 45.0 | 3.98e-01 | 82.1% | 73.1% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.58 | 44.0 | 4.44e-01 | 84.9% | 80.8% |
| 8ct0B01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 45.0 | 3.86e-01 | 82.1% | 69.3% |
| 2r6vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 44.0 | 3.82e-01 | 81.1% | 70.1% |
| 1wqsA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 46.0 | 4.65e-01 | 87.7% | 89.3% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 50.0 | 4.98e-01 | 97.2% | 99.1% |
| 2m9kA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 42.0 | 4.41e-01 | 96.2% | 87.1% |
| 4rlzA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.56 | 44.0 | 4.40e-01 | 84.0% | 86.4% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 36.0 | 4.25e-01 | 74.5% | 97.2% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.54 | 41.0 | 4.22e-01 | 83.0% | 84.0% |
| 1n08A00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.54 | 39.0 | 3.49e-01 | 86.8% | 51.9% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 41.0 | 3.98e-01 | 82.1% | 87.4% |
| 2b4vA03 | 3.30.70.1970 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 44.0 | 4.55e-01 | 100.0% | 94.9% |
| 1x31A02 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.54 | 46.0 | 3.18e-01 | 97.2% | 72.1% |
| 2imlA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 44.0 | 4.34e-01 | 90.6% | 85.8% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.53 | 41.0 | 3.89e-01 | 82.1% | 69.6% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.89e-01 | 87.7% | 84.9% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.52 | 32.0 | 3.89e-01 | 72.6% | 98.5% |
| 2ra1A04 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 39.0 | 4.12e-01 | 95.3% | 89.7% |
| 3nfwA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 46.0 | 3.86e-01 | 99.1% | 76.5% |
| 2nwuB01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.51 | 45.0 | 4.29e-01 | 97.2% | 84.1% |
| 3bnkA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 45.0 | 3.74e-01 | 98.1% | 65.6% |
| 3fgeA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 46.0 | 3.90e-01 | 100.0% | 76.7% |
| 3r4rA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.79e-01 | 91.5% | 91.3% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.51 | 45.0 | 4.09e-01 | 100.0% | 96.5% |
| 2yfuA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 37.0 | 3.42e-01 | 97.2% | 59.3% |
| 2ecuA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 45.0 | 4.05e-01 | 100.0% | 78.5% |
| 3cb0D00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 45.0 | 3.93e-01 | 100.0% | 80.1% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4663234 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 48.0 | 5.22e-01 | 83.0% | 85.6% |
| 159 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.67 | 46.0 | 4.94e-01 | 92.5% | 84.4% |
| 5051220 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 44.0 | 4.73e-01 | 83.0% | 83.3% |
| 3256764 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 52.0 | 4.83e-01 | 85.8% | 81.5% |
| 3741921 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.62 | 47.0 | 4.79e-01 | 87.7% | 81.0% |
| 4482805 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.62 | 45.0 | 3.75e-01 | 76.4% | 70.8% |
| 5026244 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 44.0 | 4.68e-01 | 80.2% | 85.6% |
| 3210962 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 46.0 | 4.82e-01 | 83.0% | 86.3% |
| 3688711 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.62 | 48.0 | 4.78e-01 | 87.7% | 79.1% |
| 4608778 | 1.1.7.107 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 | 0.61 | 45.0 | 4.38e-01 | 85.8% | 68.3% |
| 4234560 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.61 | 42.0 | 3.92e-01 | 84.0% | 56.3% |
| 3966429 | 1.1.13.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD | 0.60 | 43.0 | 4.63e-01 | 81.1% | 86.7% |
| 4646862 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.60 | 45.0 | 4.53e-01 | 90.6% | 76.4% |
| 1823202 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.60 | 46.0 | 4.61e-01 | 93.4% | 80.2% |
| 3256920 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 49.0 | 4.61e-01 | 85.8% | 73.6% |
| 3267872 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 43.0 | 4.04e-01 | 86.8% | 60.8% |
| 4441129 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.60 | 46.0 | 4.47e-01 | 84.0% | 72.5% |
| 4977991 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 46.0 | 4.34e-01 | 82.1% | 79.2% |
| 5001314 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.60 | 50.0 | 3.80e-01 | 96.2% | 39.2% |
| 4077036 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.60 | 49.0 | 3.87e-01 | 96.2% | 42.2% |
| 3988859 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.59 | 45.0 | 4.56e-01 | 83.0% | 81.9% |
| 4943359 | 304.102.1.13 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 | 0.59 | 49.0 | 3.78e-01 | 96.2% | 40.9% |
| 4273561 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.58 | 46.0 | 4.27e-01 | 84.9% | 71.9% |
| 3286458 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 46.0 | 4.35e-01 | 84.0% | 86.4% |
| 4094235 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.58 | 41.0 | 3.90e-01 | 81.1% | 62.4% |
| 3959626 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 45.0 | 3.95e-01 | 84.9% | 70.9% |
| 4278559 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.57 | 46.0 | 4.58e-01 | 88.7% | 81.8% |
| 5036917 | 304.102.1.13 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 | 0.57 | 48.0 | 4.30e-01 | 97.2% | 64.7% |
| 3636050 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.57 | 48.0 | 4.70e-01 | 92.5% | 90.4% |
| 3739064 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 35.0 | 4.23e-01 | 71.7% | 100.0% |
| 3688095 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 45.0 | 4.36e-01 | 86.8% | 88.3% |
| 4279225 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.56 | 45.0 | 4.33e-01 | 89.6% | 75.8% |
| 3187444 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.56 | 45.0 | 4.45e-01 | 86.8% | 84.3% |
| 4137973 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.56 | 44.0 | 4.40e-01 | 90.6% | 81.8% |
| 3220081 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.56 | 49.0 | 3.73e-01 | 97.2% | 67.6% |
| 4118973 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.56 | 44.0 | 4.28e-01 | 88.7% | 75.0% |
| 3934278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 39.0 | 3.87e-01 | 73.6% | 67.0% |
| 4936008 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.56 | 42.0 | 4.37e-01 | 80.2% | 87.4% |
| 4945745 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.55 | 48.0 | 3.74e-01 | 99.1% | 67.5% |
| 4398032 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.55 | 45.0 | 4.41e-01 | 88.7% | 81.7% |
| 4417145 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.55 | 43.0 | 4.26e-01 | 90.6% | 79.1% |
| 5033279 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.55 | 49.0 | 3.78e-01 | 100.0% | 81.2% |
| 3358748 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.55 | 39.0 | 4.37e-01 | 73.6% | 97.5% |
| 4028467 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.55 | 45.0 | 3.40e-01 | 91.5% | 49.5% |
| 3913172 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.55 | 47.0 | 3.77e-01 | 97.2% | 79.4% |
| 4933784 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.53 | 47.0 | 3.75e-01 | 99.1% | 74.4% |
| 4963083 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.53 | 43.0 | 3.51e-01 | 89.6% | 56.0% |
| 4275176 | 304.102.1.5 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 | 0.53 | 47.0 | 3.71e-01 | 100.0% | 83.5% |
| 4943623 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 40.0 | 4.12e-01 | 86.8% | 86.0% |
| 4197562 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.52 | 45.0 | 3.49e-01 | 97.2% | 54.3% |
| 4069712 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.52 | 45.0 | 3.71e-01 | 97.2% | 55.0% |
| 3513184 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.52 | 45.0 | 3.56e-01 | 96.2% | 74.2% |
| 3907134 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.52 | 44.0 | 3.55e-01 | 95.3% | 81.4% |
D6
medium
residues 815-878
Domain cluster:
rep: IMGVR_UViG_3300009121_000002-3300009121-Ga0118671_100022836__D15-93
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.74 | 59.0 | 5.77e-01 | 100.0% | 80.3% |
| 2x0qA01 | 3.30.310.280 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.62 | 49.0 | 4.01e-01 | 92.2% | 63.2% |
| 1bnkA00 | 3.10.300.10 | Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) | 0.57 | 44.0 | 3.26e-01 | 89.1% | 64.5% |
| 2kgyA00 | 3.30.505.20 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › | 0.57 | 38.0 | 3.47e-01 | 70.3% | 59.8% |
| 4ml0B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.55 | 40.0 | 3.63e-01 | 78.1% | 70.0% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.55 | 46.0 | 3.00e-01 | 100.0% | 97.9% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 37.0 | 3.90e-01 | 71.9% | 89.5% |
| 2e6zA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 37.0 | 3.88e-01 | 73.4% | 84.7% |
| 7qrlA01 | 2.70.70.10 | Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) | 0.54 | 44.0 | 3.64e-01 | 100.0% | 91.1% |
| 2joiA00 | 3.30.310.190 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.54 | 40.0 | 3.67e-01 | 87.5% | 84.4% |
| 2zoeB02 | 2.60.120.1080 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 43.0 | 3.38e-01 | 98.4% | 71.1% |
| 3havA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 37.0 | 3.39e-01 | 81.2% | 70.8% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943228 | 1.1.7.146 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_Xtn | 0.75 | 60.0 | 5.99e-01 | 100.0% | 87.7% |
| 4407497 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.74 | 60.0 | 5.99e-01 | 100.0% | 89.2% |
| 5079674 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.74 | 65.0 | 6.17e-01 | 100.0% | 82.7% |
| 4618103 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 54.0 | 5.53e-01 | 85.9% | 88.3% |
| 4492248 | 270.1.1.1 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Pur_DNA_glyco | 0.57 | 44.0 | 3.24e-01 | 87.5% | 71.8% |
| 4284219 | 4312.1.1.21 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › PF29782 | 0.56 | 40.0 | 3.31e-01 | 78.1% | 66.4% |
| 4251848 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 40.0 | 3.14e-01 | 75.0% | 57.2% |
| 3495981 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.56 | 39.0 | 3.03e-01 | 76.6% | 70.6% |
| 5043349 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 40.0 | 3.13e-01 | 78.1% | 38.6% |
| 3395563 | 3249.1.1.0 ↗ | beta sandwiches › beta-sandwich domain in YqeH GTPase › beta-sandwich domain in YqeH GTPase › beta-sandwich domain in YqeH GTPase | 0.55 | 37.0 | 2.77e-01 | 71.9% | 77.8% |
| 5024072 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 37.0 | 3.27e-01 | 73.4% | 67.6% |
| 4177200 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.54 | 37.0 | 3.91e-01 | 71.9% | 89.1% |
| 3332764 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.54 | 42.0 | 3.94e-01 | 90.6% | 90.6% |
| 3220024 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.54 | 42.0 | 2.83e-01 | 85.9% | 45.3% |
| 3588251 | 6043.1.1.3 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N | 0.53 | 39.0 | 3.52e-01 | 79.7% | 82.2% |
| 4028315 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.53 | 38.0 | 3.28e-01 | 78.1% | 77.3% |
| 4941159 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.53 | 42.0 | 3.64e-01 | 90.6% | 77.1% |
| 4020162 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.53 | 40.0 | 2.51e-01 | 85.9% | 21.2% |
| 3500684 | 4.1.1.71 ↗ | beta barrels › SH3 › SH3 › SH3 › Gemin7 | 0.52 | 35.0 | 3.39e-01 | 73.4% | 76.2% |
| 3220929 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 36.0 | 3.51e-01 | 78.1% | 90.7% |
D7
medium
residues 1142-1268
Domain cluster:
rep: NC_023587.1__YP_009008145.1__S-MbCM7_011__00011__D857-965
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6orhA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 39.0 | 4.12e-01 | 79.5% | 68.4% |
| 1h3gA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 39.0 | 4.42e-01 | 82.7% | 87.8% |
| 8hhvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 38.0 | 3.91e-01 | 78.7% | 70.5% |
| 1zxqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 35.0 | 4.02e-01 | 85.0% | 90.6% |
| 4zrxA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 43.0 | 4.64e-01 | 81.9% | 98.1% |
| 2ws9201 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 45.0 | 3.93e-01 | 87.4% | 85.6% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.56 | 32.0 | 3.57e-01 | 81.9% | 72.6% |
| 3s7vC00 | 2.60.175.10 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus | 0.55 | 44.0 | 3.51e-01 | 86.6% | 95.1% |
| 2w5fB01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 42.0 | 4.04e-01 | 82.7% | 97.4% |
| 4a4aA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 44.0 | 4.36e-01 | 86.6% | 99.3% |
| 1x9pA01 | 2.60.120.550 | Mainly Beta › Sandwich › Jelly Rolls › Penton protein; domain 1 | 0.55 | 43.0 | 4.02e-01 | 84.3% | 96.3% |
| 2okxA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 43.0 | 3.84e-01 | 85.8% | 66.3% |
| 1o59A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 42.0 | 4.13e-01 | 81.9% | 99.3% |
| 1w9sA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 41.0 | 4.12e-01 | 80.3% | 99.3% |
| 1dyoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 42.0 | 3.97e-01 | 82.7% | 97.4% |
| 3gf6A00 | 2.60.120.750 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF3845 | 0.54 | 43.0 | 3.63e-01 | 85.8% | 84.5% |
| 1dunA00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.54 | 36.0 | 3.69e-01 | 70.9% | 70.8% |
| 1sixA00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.54 | 36.0 | 3.42e-01 | 70.9% | 56.2% |
| 3napC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 44.0 | 3.47e-01 | 89.0% | 74.3% |
| 2d4lA01 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.54 | 35.0 | 3.79e-01 | 71.7% | 79.2% |
| 2w47A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 42.0 | 4.13e-01 | 83.5% | 97.0% |
| 4ca9A00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.53 | 37.0 | 4.10e-01 | 85.0% | 90.8% |
| 5k0uB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.58e-01 | 88.2% | 77.0% |
| 2zewB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 41.0 | 3.98e-01 | 82.7% | 97.3% |
| 4zxeC00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 41.0 | 4.05e-01 | 81.9% | 96.3% |
| 5aca300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 43.0 | 3.59e-01 | 89.0% | 79.3% |
| 3k4zA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 40.0 | 3.72e-01 | 81.9% | 98.1% |
| 1cx1A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 39.0 | 3.74e-01 | 81.1% | 94.1% |
| 5dzxA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 37.0 | 4.02e-01 | 81.9% | 90.7% |
| 2xdhA00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 40.0 | 3.93e-01 | 83.5% | 79.7% |
| 4il7A00 | 2.60.120.1300 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 33.0 | 3.86e-01 | 81.1% | 100.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3410708 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.59 | 40.0 | 3.76e-01 | 70.1% | 95.8% |
| 3971638 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 44.0 | 4.63e-01 | 80.3% | 93.0% |
| 4938291 | 10.3.1.0 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like | 0.56 | 44.0 | 4.39e-01 | 82.7% | 99.2% |
| 27230 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.56 | 36.0 | 3.76e-01 | 70.9% | 68.9% |
| 4962830 | 10.1.2.197 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF7263 | 0.56 | 39.0 | 4.38e-01 | 84.3% | 96.8% |
| 27204 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.55 | 36.0 | 3.61e-01 | 70.1% | 63.4% |
| 3567758 | 10.32.1.7 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › XRCC1_N | 0.55 | 42.0 | 4.00e-01 | 81.1% | 70.0% |
| 3172077 | 10.32.1.238 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29980 | 0.54 | 40.0 | 3.89e-01 | 78.0% | 89.0% |
| 3503404 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 36.0 | 3.86e-01 | 78.7% | 79.6% |
| 3296624 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 43.0 | 3.98e-01 | 84.3% | 87.5% |
| 140024 | 10.2.1.1 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv | 0.54 | 44.0 | 3.47e-01 | 89.0% | 74.3% |
| 3798428 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 33.0 | 3.65e-01 | 81.9% | 78.9% |
| 2542981 | 10.42.1.0 ↗ | beta sandwiches › jelly-roll › ssRNA positive-strand viruses coat protein P (projecting) domain › ssRNA positive-strand viruses coat protein P (projecting) domain | 0.54 | 39.0 | 4.00e-01 | 82.7% | 78.2% |
| 3994329 | 10.32.1.233 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Hemicentin | 0.54 | 35.0 | 3.89e-01 | 97.6% | 85.0% |
| 3663362 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 42.0 | 3.91e-01 | 84.3% | 93.8% |
| 3588187 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 40.0 | 3.89e-01 | 81.9% | 100.0% |
| 5041322 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 41.0 | 4.40e-01 | 81.9% | 100.0% |
| 4508798 | 10.32.1.278 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Asp2 | 0.53 | 37.0 | 3.69e-01 | 73.2% | 86.7% |
| 5039888 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.52 | 41.0 | 4.14e-01 | 84.3% | 91.2% |
| 1810617 | 10.32.1.86 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C_2 | 0.51 | 39.0 | 3.96e-01 | 81.9% | 100.0% |
| 4021603 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 39.0 | 3.95e-01 | 81.9% | 97.7% |
| 4301091 | 1.1.8.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C | 0.50 | 35.0 | 3.94e-01 | 99.2% | 100.0% |
| 3026406 | 10.2.1.57 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Bbp16 | 0.50 | 39.0 | 3.90e-01 | 81.9% | 94.6% |
| 4177877 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.50 | 39.0 | 3.67e-01 | 82.7% | 92.9% |