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KJ019128.1__AIX38161.1__Syn7803US88_160__00160

Bact-Vir

KJ019128.1__AIX38161.1__Syn7803US88_160__00160

Identity

Accession:
KJ019128 ↗
Kingdom:
phage

Quality

90.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Namakavirus› Synechococcus_phage_S-MbCM6

TaxID: 3126011

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-136
PDB
Domain cluster: rep: GU071108.1__ADO99604.1__Syn33_179__00175__D3-133
D2 high residues 148-298_428-448
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 28.0 3.92e-01 90.7% 90.5%
4jgiA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.55 25.0 3.48e-01 95.9% 87.5%
3rfyA02 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.51 31.0 3.83e-01 86.0% 96.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486991 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 30.0 3.35e-01 100.0% 62.1%
4545641 2008.1.1.78 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc 0.55 37.0 3.80e-01 73.8% 68.8%
3964769 2008.1.1.78 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc 0.54 37.0 3.70e-01 73.8% 66.1%
3594135 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.54 30.0 3.86e-01 99.4% 94.0%
3976340 2008.1.1.31 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC 0.53 37.0 3.64e-01 70.9% 90.8%
4481698 2008.1.1.106 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HamA 0.52 45.0 4.12e-01 94.2% 92.7%
4089107 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.50 31.0 3.55e-01 89.0% 81.5%
D3 medium residues 299-427
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.67 31.0 4.28e-01 70.5% 87.7%
6z74C02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.62 36.0 3.40e-01 88.4% 46.5%
2qe9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.58 47.0 4.39e-01 85.3% 86.1%
4bujE03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.57 35.0 2.88e-01 89.1% 34.1%
2e8gA01 1.20.1440.150 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.57 38.0 3.87e-01 88.4% 69.4%
3u52D00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.56 46.0 3.41e-01 87.6% 46.3%
2nsfA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 42.0 3.95e-01 82.9% 87.4%
5b7cA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 31.0 3.35e-01 76.7% 64.9%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 40.0 3.62e-01 79.1% 71.1%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.52 44.0 3.17e-01 94.6% 96.9%
4c0nA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 39.0 3.72e-01 80.6% 77.3%
3godB02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.50 37.0 3.23e-01 77.5% 95.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5065394 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.60 49.0 4.08e-01 88.4% 68.1%
3250261 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.56 30.0 3.49e-01 80.6% 71.1%
4680153 7015.1.1.1 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC 0.55 41.0 4.04e-01 88.4% 71.4%
56815 620.1.1.0 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases 0.54 43.0 3.99e-01 82.9% 86.9%
3377718 633.21.1.18 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.51 37.0 3.56e-01 74.4% 100.0%
3743178 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.51 34.0 3.36e-01 72.1% 63.7%
4174741 601.1.2.77 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › FUSC 0.51 39.0 3.53e-01 81.4% 88.0%
3686303 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.50 37.0 3.02e-01 76.0% 81.2%
D4 medium residues 449-556
PDB
Domain cluster: rep: GU071095.1__ADO97501.1__SSM2_160__00157__D154-166_371-439
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e1qC05 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.55 33.0 3.28e-01 70.4% 55.1%
3eo4D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 38.0 3.35e-01 73.1% 59.9%
3i3gA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 37.0 3.46e-01 72.2% 64.3%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 27.0 3.21e-01 73.1% 69.0%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 40.0 4.10e-01 88.0% 84.2%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.52 33.0 3.61e-01 83.3% 81.7%
3n4pC00 3.30.420.320 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › DNA-packaging terminase, C-terminal nuclease domain 0.52 39.0 3.10e-01 78.7% 71.6%
3owvB00 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.52 45.0 3.56e-01 96.3% 100.0%
3gwrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.47e-01 81.5% 63.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3459574 213.1.1.72 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 0.57 41.0 3.67e-01 74.1% 66.0%
5057564 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 36.0 3.20e-01 70.4% 43.8%
3883654 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 40.0 3.35e-01 74.1% 59.2%
3482199 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 37.0 2.39e-01 75.9% 14.7%
5069904 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.55 36.0 3.32e-01 77.8% 50.0%
3193099 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 39.0 2.63e-01 84.3% 18.2%
4996639 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.54 38.0 3.24e-01 72.2% 91.1%
4383111 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 42.0 3.50e-01 88.0% 83.9%
3190674 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 37.0 4.04e-01 84.3% 88.9%
5031205 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 37.0 3.16e-01 75.9% 53.2%
3181136 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.51 37.0 3.58e-01 77.8% 93.1%
3491648 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 37.0 3.60e-01 77.8% 99.2%
3395260 206.1.1.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.51 36.0 2.46e-01 74.1% 69.5%
None — 0.50 37.0 2.55e-01 79.6% 30.3%