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KJ019159.1AIX45734.1Syn7803C34_183__00183

Bact-Vir

KJ019159.1__AIX45734.1__Syn7803C34_183__00183

Identity

Accession:: KJ019159 ↗
Kingdom:: phage

Quality

52.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Atlauavirus› Synechococcus_phage_ACG-2014f

TaxID: 1493511

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-54

PDB

Domain cluster: rep: NC_020859.1__YP_007675634.1__SWTG_00144__00168__D4-51

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3e0rB01	3.10.180.10	Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1	0.68	50.0	3.83e-01	80.4%	47.1%
1v8cA02	3.30.1370.80	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain	0.64	48.0	4.12e-01	80.4%	62.5%
6jkuA01	2.30.40.10	Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1	0.62	44.0	3.64e-01	78.4%	71.4%
4bfmA00	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.61	42.0	2.66e-01	76.5%	26.8%
1yrrA01	2.30.40.10	Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1	0.57	43.0	3.66e-01	86.3%	88.0%
1onwA01	2.30.40.10	Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1	0.57	44.0	3.54e-01	90.2%	62.7%
2w9mB03	3.30.460.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2	0.54	44.0	3.91e-01	98.0%	95.1%
1d0xA04	1.20.120.720	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain	0.53	42.0	3.19e-01	92.2%	88.3%
7a0hA01	3.30.1140.60	Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit	0.53	43.0	3.61e-01	100.0%	95.0%
6rygA00	3.10.100.10	Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A	0.52	37.0	2.97e-01	78.4%	69.0%
1o12B01	2.30.40.10	Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1	0.51	36.0	3.32e-01	78.4%	73.6%
7vruC01	3.90.220.20	Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains	0.50	36.0	2.56e-01	82.4%	23.7%

ECOD (16)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2041876	314.1.1.12 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat	0.66	55.0	3.62e-01	98.0%	25.8%
4930899	243.6.1.9 ↗	a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2	0.65	49.0	4.31e-01	84.3%	71.2%
3589333	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.63	42.0	3.53e-01	70.6%	98.9%
5011464	243.6.1.9 ↗	a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2	0.63	45.0	3.83e-01	76.5%	74.1%
4878645	1043.1.1.0 ↗	beta complex topology › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein › Beta domain of coronavirus spike glycoprotein	0.62	36.0	4.15e-01	70.6%	100.0%
3821041	4958.1.1.1 ↗	a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4	0.59	39.0	2.56e-01	100.0%	14.9%
4032275	314.1.1.12 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat	0.58	47.0	3.12e-01	98.0%	23.9%
4544724	243.6.1.9 ↗	a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2	0.57	42.0	3.85e-01	86.3%	80.0%
4861571	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.56	42.0	3.60e-01	86.3%	88.9%
4809195	4958.1.1.1 ↗	a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4	0.55	35.0	2.57e-01	100.0%	23.5%
3202619	206.1.1.11 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH	0.55	41.0	2.64e-01	84.3%	68.2%
5081035	4958.1.1.0 ↗	a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit	0.53	43.0	2.86e-01	98.0%	38.3%
3938779	4958.1.1.1 ↗	a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4	0.52	43.0	2.92e-01	98.0%	42.9%
3784119	4958.1.1.1 ↗	a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4	0.52	44.0	2.68e-01	100.0%	27.1%
5049548	4958.1.1.4 ↗	a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5	0.52	42.0	2.85e-01	98.0%	39.1%
4966695	4958.1.1.0 ↗	a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit	0.51	41.0	2.81e-01	98.0%	41.9%

D2 high residues 87-140

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.82	65.0	5.84e-01	83.3%	66.2%
1ax8A00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.78	49.0	3.65e-01	81.5%	26.9%
5ffdA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.75	56.0	4.11e-01	79.6%	31.4%
2b1eA01	1.20.58.1150	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.73	59.0	4.96e-01	98.1%	53.5%
2gf4A00	1.20.1270.110	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058	0.68	59.0	4.99e-01	96.3%	81.8%
1oj6A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.68	52.0	3.76e-01	83.3%	29.9%
1yhuB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.67	52.0	3.74e-01	83.3%	42.4%
5z7rA02	1.10.12.10	Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2	0.63	43.0	4.45e-01	75.9%	75.0%
2w43A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.60	40.0	3.99e-01	75.9%	64.9%
7wj9A01	3.20.20.80	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases	0.55	45.0	2.90e-01	96.3%	88.8%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3685214	632.18.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901	0.81	75.0	6.34e-01	100.0%	85.9%
144750	150.3.1.3 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL6	0.78	58.0	3.90e-01	81.5%	22.8%
3392929	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.73	56.0	5.14e-01	85.2%	64.3%
4026761	5001.1.1.31 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › GPR180-TMEM145_TM	0.71	60.0	3.85e-01	94.4%	21.2%
5045248	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.70	52.0	4.49e-01	79.6%	51.8%
4540208	3921.1.1.1 ↗	alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Rnf-Nqr	0.70	61.0	4.12e-01	100.0%	65.2%
3242033	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.69	56.0	4.60e-01	90.7%	53.0%

D3 medium residues 420-558

PDB

Domain cluster: representative

D4 medium residues 559-646

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1nrwA02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.56	35.0	3.11e-01	80.7%	42.3%
3zojA00	1.20.1080.10	Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein.	0.55	45.0	3.24e-01	89.8%	61.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4028576	2498.4.1.1 ↗	mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90	0.51	44.0	3.68e-01	98.9%	92.5%

D5 medium residues 647-750

PDB

D6 medium residues 795-855

PDB