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KJ025957.1__AHY25343.1__PS2_096__00096

Bact-Vir

KJ025957.1__AHY25343.1__PS2_096__00096

Identity

Accession:
KJ025957 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Muldoonvirus› Serratia_phage_PS2

TaxID: 1481112

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-65
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 39.0 4.18e-01 78.8% 71.1%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 4.29e-01 92.3% 62.5%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 53.0 4.27e-01 98.1% 75.5%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 39.0 3.61e-01 78.8% 47.8%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 48.0 3.72e-01 100.0% 38.9%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 49.0 3.70e-01 98.1% 58.8%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 3.64e-01 82.7% 46.7%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 44.0 3.34e-01 100.0% 34.9%
1mknA00 2.20.60.10 Mainly Beta › Single Sheet › Heparin-binding Growth Factor, Midkine; Chain A › Pleiotrophin/Midkine, N-terminal domain 0.57 44.0 4.30e-01 98.1% 78.0%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 45.0 4.40e-01 100.0% 80.4%
2cs0A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 42.0 3.53e-01 100.0% 45.3%
1mo9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 40.0 3.01e-01 82.7% 29.6%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 47.0 3.65e-01 100.0% 69.0%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 43.0 3.30e-01 88.5% 38.8%
2cn3A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.79e-01 92.3% 84.2%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.49e-01 86.5% 73.8%
4at0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 48.0 2.93e-01 100.0% 63.5%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 45.0 4.42e-01 98.1% 83.9%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.55 37.0 3.32e-01 78.8% 48.1%
1rjtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 44.0 4.01e-01 92.3% 71.2%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 43.0 2.84e-01 88.5% 19.5%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.55 39.0 3.16e-01 80.8% 47.0%
4jpbW02 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.55 36.0 3.25e-01 80.8% 44.3%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 37.0 3.66e-01 76.9% 66.7%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 45.0 3.46e-01 100.0% 69.9%
1vybA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.54 39.0 2.68e-01 84.6% 88.6%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 40.0 3.13e-01 86.5% 86.6%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.12e-01 76.9% 90.5%
3eeiA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 42.0 2.78e-01 88.5% 19.9%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.24e-01 88.5% 64.5%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 41.0 2.74e-01 90.4% 85.7%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 37.0 3.75e-01 98.1% 78.0%
2rsoA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.12e-01 76.9% 42.4%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.33e-01 98.1% 91.9%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 2.88e-01 78.8% 38.9%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 40.0 3.13e-01 90.4% 40.5%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.52 34.0 3.66e-01 96.2% 85.7%
1u6lA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 40.0 3.14e-01 90.4% 42.9%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.16e-01 84.6% 72.2%
1f5aA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 40.0 2.94e-01 90.4% 37.8%
1ewiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 2.97e-01 80.8% 39.5%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 40.0 2.63e-01 90.4% 19.4%
4zo2A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.51 42.0 2.70e-01 100.0% 23.9%
5b7gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 42.0 2.74e-01 96.2% 19.7%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 41.0 3.27e-01 100.0% 43.5%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 37.0 2.47e-01 84.6% 18.5%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 42.0 3.19e-01 100.0% 50.4%
2bbuA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 39.0 2.79e-01 100.0% 28.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3632189 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.73 57.0 5.36e-01 90.4% 69.2%
3820607 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.68 47.0 4.41e-01 82.7% 58.5%
4354770 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.68 46.0 4.20e-01 84.6% 52.9%
4467360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 4.23e-01 84.6% 60.0%
3221562 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.65 43.0 3.43e-01 76.9% 31.9%
3735661 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.65 51.0 4.13e-01 90.4% 44.8%
3976064 2.4.1.9 ↗ beta barrels › OB-fold › MOP-like › MOP-like › YobH 0.64 40.0 3.80e-01 71.2% 50.8%
3798917 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.64 51.0 4.92e-01 90.4% 78.3%
3246931 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.63 54.0 4.12e-01 100.0% 60.8%
3798208 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 54.0 4.25e-01 100.0% 68.7%
3591064 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 40.0 3.80e-01 82.7% 53.8%
3392485 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.61 52.0 4.47e-01 100.0% 63.3%
3478003 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 50.0 4.02e-01 98.1% 71.8%
4938191 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.87e-01 92.3% 47.6%
4195825 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.59 51.0 3.96e-01 100.0% 67.5%
3259098 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 45.0 3.55e-01 88.5% 57.5%
3516025 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 44.0 3.65e-01 86.5% 74.3%
5022340 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 43.0 3.96e-01 82.7% 60.0%
5048073 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.58 44.0 4.18e-01 90.4% 69.2%
5044263 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 49.0 4.53e-01 98.1% 74.3%
3750184 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 47.0 4.31e-01 100.0% 66.7%
3189183 2004.6.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › C-terminal domain in a putative metallopeptidase YP_676511.1 › C-terminal domain in a putative metallopeptidase YP_676511.1 › MlrC_C 0.58 46.0 3.16e-01 90.4% 37.9%
3200262 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 46.0 2.89e-01 94.2% 60.0%
4225322 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.57 44.0 4.17e-01 88.5% 72.3%
3415116 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 44.0 2.49e-01 90.4% 16.4%
5074128 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.56 43.0 4.12e-01 90.4% 72.3%
3789625 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.56 41.0 3.09e-01 80.8% 90.4%
1171964 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.56 38.0 3.69e-01 82.7% 63.8%
3592494 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 43.0 3.25e-01 90.4% 37.9%
4965107 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.56 44.0 2.71e-01 90.4% 38.3%
None — 0.55 44.0 3.27e-01 90.4% 36.6%
3774381 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 38.0 3.51e-01 80.8% 52.9%
4459163 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 43.0 3.34e-01 88.5% 77.6%
3887472 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.35e-01 84.6% 70.9%
152530 2011.2.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.55 43.0 2.85e-01 88.5% 19.9%
5054507 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 36.0 3.31e-01 73.1% 48.0%
3405853 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.54 39.0 3.75e-01 96.2% 66.7%
3390929 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.54 37.0 3.61e-01 94.2% 63.3%
4963351 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 40.0 3.17e-01 82.7% 39.2%
138374 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.54 42.0 3.73e-01 96.2% 55.7%
4483491 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.54 42.0 2.93e-01 90.4% 28.6%
5064473 2011.2.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.54 42.0 2.91e-01 88.5% 24.2%
3839019 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 39.0 2.45e-01 80.8% 40.0%
4538466 3197.1.1.1 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.53 37.0 2.90e-01 76.9% 70.0%
3793075 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 41.0 3.09e-01 100.0% 34.1%
1700216 2011.2.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.53 41.0 2.72e-01 88.5% 19.4%
3252808 1170.1.2.0 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.53 40.0 3.72e-01 88.5% 65.7%
4977574 241.11.1.7 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › DUF3788 0.52 35.0 2.77e-01 73.1% 30.8%
3628065 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.52 40.0 2.93e-01 100.0% 28.7%
4382135 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 42.0 3.39e-01 94.2% 73.6%
3370663 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.52 38.0 3.78e-01 84.6% 83.1%
4440297 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 39.0 2.88e-01 82.7% 95.0%
3164094 7541.1.1.1 ↗ a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.51 41.0 3.06e-01 100.0% 80.0%
None — 0.51 38.0 2.34e-01 84.6% 31.5%
4888232 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 2.82e-01 86.5% 75.9%
3587323 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.51 36.0 2.74e-01 80.8% 60.6%
5001279 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.51 35.0 2.21e-01 100.0% 11.1%
4962224 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.50 39.0 2.87e-01 92.3% 48.2%
4465859 316.1.1.30 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PAP_NTPase 0.50 40.0 2.87e-01 92.3% 40.6%
D2 high residues 68-125
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.78 55.0 4.49e-01 94.8% 41.7%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.75 60.0 5.19e-01 100.0% 56.8%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.74 62.0 5.83e-01 100.0% 76.1%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 53.0 5.09e-01 100.0% 69.7%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 56.0 4.73e-01 100.0% 63.4%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.63 45.0 3.88e-01 75.9% 47.4%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.62 51.0 3.56e-01 98.3% 28.8%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 49.0 4.66e-01 93.1% 77.1%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 52.0 4.10e-01 100.0% 74.4%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 50.0 3.75e-01 98.3% 38.5%
1wr2A01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 49.0 3.69e-01 100.0% 36.9%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 37.0 2.81e-01 98.3% 29.3%
4eo3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 44.0 3.55e-01 100.0% 81.9%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 46.0 3.43e-01 100.0% 75.6%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.54 48.0 3.95e-01 100.0% 94.4%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 3.87e-01 84.5% 81.8%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 46.0 4.18e-01 100.0% 74.1%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 44.0 3.30e-01 96.6% 74.7%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 47.0 3.65e-01 100.0% 75.0%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 47.0 2.85e-01 100.0% 75.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.54e-01 84.5% 61.1%
2fgzA01 2.60.40.1130 Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain 0.53 36.0 2.92e-01 70.7% 73.9%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 48.0 3.56e-01 100.0% 66.4%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.45e-01 98.3% 50.0%
3n54B01 6.20.190.10 Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 0.53 36.0 3.55e-01 70.7% 67.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.17e-01 74.1% 49.3%
4oc8A02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 36.0 2.69e-01 77.6% 53.5%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 42.0 3.51e-01 100.0% 53.9%
4jrfA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 37.0 2.76e-01 82.8% 53.1%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
119245 252.3.1.1 ↗ a+b two layers › DNA-binding domain › Uncharacterized protein yaiA › Uncharacterized protein yaiA › YaiA 0.74 62.0 5.83e-01 100.0% 76.1%
3957641 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.70 61.0 6.28e-01 94.8% 98.2%
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.70 55.0 5.69e-01 100.0% 90.9%
3658323 284.1.2.1 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.66 38.0 3.09e-01 100.0% 32.4%
3735697 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.64 54.0 4.96e-01 100.0% 75.0%
4009433 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 54.0 3.34e-01 100.0% 21.9%
5027968 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 57.0 4.51e-01 100.0% 80.9%
3986085 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.63 52.0 4.53e-01 96.6% 64.2%
3649429 220.1.1.187 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.63 56.0 4.00e-01 100.0% 34.7%
4194213 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 49.0 4.67e-01 98.3% 72.9%
3940145 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.61 52.0 3.22e-01 98.3% 61.0%
3962011 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.61 50.0 3.92e-01 98.3% 40.0%
4943448 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 54.0 4.27e-01 100.0% 72.5%
4467977 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.60 53.0 4.41e-01 100.0% 68.6%
3714738 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.60 38.0 3.01e-01 72.4% 30.0%
3962721 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 49.0 4.01e-01 96.6% 48.3%
4298591 7503.1.1.3 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N 0.60 50.0 3.81e-01 98.3% 38.6%
4969105 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 50.0 3.44e-01 100.0% 25.8%
4945290 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 46.0 4.64e-01 93.1% 96.7%
3492699 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 47.0 4.20e-01 98.3% 64.2%
None — 0.58 49.0 3.34e-01 100.0% 23.9%
3711707 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.58 48.0 3.66e-01 93.1% 82.8%
3481139 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 44.0 4.43e-01 81.0% 98.3%
4451022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 3.97e-01 100.0% 47.5%
5031204 206.1.3.26 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 0.58 49.0 3.32e-01 100.0% 24.2%
3926984 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 46.0 3.25e-01 91.4% 27.0%
3967778 206.1.3.26 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 0.58 49.0 3.33e-01 100.0% 25.1%
4958552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 50.0 4.03e-01 100.0% 58.3%
3741279 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.57 48.0 3.75e-01 100.0% 72.1%
4947681 206.1.3.26 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 0.57 48.0 3.25e-01 100.0% 23.8%
3194028 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.57 44.0 3.77e-01 91.4% 94.3%
3223830 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 36.0 3.78e-01 79.3% 74.0%
3817114 387.1.1.10 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF 0.57 37.0 3.96e-01 74.1% 80.0%
3898198 220.1.1.184 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.56 46.0 3.77e-01 100.0% 52.0%
3251857 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 44.0 3.56e-01 100.0% 40.0%
3193874 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 3.90e-01 100.0% 50.4%
3614177 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 45.0 3.42e-01 94.8% 74.7%
3540088 220.1.1.184 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.55 46.0 3.71e-01 100.0% 52.3%
3516863 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.55 46.0 3.92e-01 93.1% 57.9%
3917310 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 45.0 4.41e-01 100.0% 87.7%
3718455 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.55 49.0 3.92e-01 100.0% 74.6%
3593375 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 47.0 4.70e-01 98.3% 100.0%
4947846 206.1.3.26 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 0.54 45.0 3.14e-01 100.0% 26.1%
3614175 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 35.0 2.91e-01 75.9% 34.5%
3781935 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 45.0 3.66e-01 100.0% 88.0%
3839832 3799.1.1.1 ↗ alpha bundles › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA N-terminal extracellular adhesion domain › SabA_adhesion 0.54 42.0 2.50e-01 86.2% 12.9%
5035471 206.1.3.26 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 0.54 43.0 2.99e-01 98.3% 24.2%
3698360 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 48.0 3.45e-01 100.0% 55.9%
4990881 206.1.3.26 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 0.54 44.0 3.07e-01 100.0% 26.2%
4026383 6127.1.1.2 ↗ beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › PfEMP1_CIDRalpha1_dom 0.53 39.0 3.64e-01 81.0% 89.3%
4003463 220.1.1.168 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.53 41.0 3.34e-01 89.7% 45.6%
3932900 2484.1.1.145 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 0.52 41.0 3.11e-01 100.0% 38.9%
3541856 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.52 39.0 3.01e-01 84.5% 33.8%
4961486 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.51 40.0 2.52e-01 93.1% 90.9%
3718008 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 32.0 3.38e-01 74.1% 74.0%
3432379 387.1.1.10 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF 0.50 38.0 3.68e-01 84.5% 81.5%
5034195 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.50 36.0 3.69e-01 89.7% 81.8%