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KJ025957.1__AHY25350.1__PS2_104__00104

Bact-Vir

KJ025957.1__AHY25350.1__PS2_104__00104

Identity

Accession:
KJ025957 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-63
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 3.75e-01 100.0% 29.4%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 3.68e-01 96.7% 30.7%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.69 45.0 3.83e-01 88.3% 41.1%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 3.56e-01 96.7% 29.5%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.68 33.0 3.06e-01 78.3% 35.1%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.67 34.0 3.23e-01 80.0% 40.6%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 44.0 3.33e-01 95.0% 30.9%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.64 44.0 2.84e-01 71.7% 17.9%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.63 32.0 2.99e-01 81.7% 36.8%
4c1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.61 41.0 2.56e-01 71.7% 12.0%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 31.0 2.86e-01 91.7% 35.8%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 3.62e-01 83.3% 61.4%
6uqjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 48.0 3.06e-01 93.3% 60.9%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 47.0 2.86e-01 90.0% 13.2%
3u2rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.57e-01 88.3% 98.5%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.35e-01 90.0% 37.1%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 51.0 3.64e-01 100.0% 36.3%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 43.0 3.76e-01 83.3% 59.6%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.18e-01 76.7% 84.1%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 49.0 3.76e-01 100.0% 44.9%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 50.0 3.35e-01 100.0% 75.7%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 48.0 4.10e-01 100.0% 62.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 47.0 3.59e-01 95.0% 73.0%
2bv6A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 3.49e-01 91.7% 69.1%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.33e-01 88.3% 50.4%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.54 50.0 3.36e-01 100.0% 61.4%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.24e-01 83.3% 84.1%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 46.0 3.09e-01 100.0% 51.8%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 36.0 3.08e-01 76.7% 40.0%
7mi4A01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 42.0 2.95e-01 86.7% 52.8%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 46.0 3.70e-01 100.0% 50.4%
3t5tB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.53 48.0 3.05e-01 100.0% 67.9%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 47.0 3.57e-01 98.3% 75.0%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 47.0 3.90e-01 100.0% 61.9%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.17e-01 80.0% 72.2%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 39.0 2.82e-01 81.7% 88.9%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 44.0 3.41e-01 93.3% 84.5%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.52 38.0 3.23e-01 78.3% 82.0%
5ao2B02 3.30.70.2760 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 2.97e-01 70.0% 95.5%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.51 40.0 2.95e-01 88.3% 45.3%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 41.0 2.77e-01 95.0% 48.0%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.50 41.0 3.17e-01 91.7% 80.1%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3287925 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.81 58.0 4.22e-01 100.0% 29.0%
3498497 301.7.1.0 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.77 42.0 2.77e-01 83.3% 14.7%
3659885 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.75 40.0 3.37e-01 71.7% 33.7%
3941407 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.73 51.0 3.91e-01 100.0% 31.0%
4928059 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.72 51.0 3.99e-01 100.0% 34.6%
4987009 3837.1.1.1 alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.71 56.0 4.09e-01 83.3% 34.0%
3738385 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.70 33.0 2.92e-01 78.3% 31.8%
4340473 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.69 33.0 2.93e-01 78.3% 31.8%
4676848 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.69 34.0 3.21e-01 80.0% 37.3%
4113442 101.26.1.2 alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 0.68 51.0 3.87e-01 81.7% 34.5%
3680772 109.4.1.728 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 45.0 3.09e-01 70.0% 24.9%
3485595 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 47.0 3.07e-01 73.3% 20.9%
3236563 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.66 45.0 3.55e-01 71.7% 48.8%
3351130 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.66 30.0 3.15e-01 76.7% 45.5%
3913543 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.65 45.0 2.77e-01 71.7% 14.9%
3227090 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.65 50.0 3.56e-01 81.7% 88.0%
3281154 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.63 32.0 2.93e-01 81.7% 35.0%
3620531 5001.1.1.60 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx 0.63 53.0 3.34e-01 100.0% 92.3%
5079134 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.62 48.0 2.95e-01 83.3% 38.3%
4424168 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.62 46.0 3.57e-01 80.0% 59.3%
5071300 601.27.1.0 alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like 0.61 55.0 3.90e-01 100.0% 78.9%
3970823 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.60 37.0 3.25e-01 80.0% 41.1%
1291966 304.7.1.5 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › SUB1_ProdP9 0.60 31.0 2.86e-01 91.7% 35.8%
3576510 5051.1.1.1 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.60 52.0 3.11e-01 100.0% 14.1%
3232477 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.60 43.0 3.70e-01 78.3% 75.0%
4201017 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 41.0 3.10e-01 73.3% 73.1%
3628950 5001.1.1.60 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx 0.59 47.0 3.19e-01 88.3% 30.2%
4303957 2006.1.6.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.59 43.0 3.12e-01 81.7% 29.7%
3957538 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.58 52.0 3.80e-01 96.7% 68.7%
5005002 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.58 44.0 3.30e-01 80.0% 53.8%
3924659 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.58 52.0 3.25e-01 100.0% 56.6%
4267064 304.24.1.3 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.58 35.0 3.08e-01 80.0% 40.0%
3620194 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.58 51.0 3.16e-01 100.0% 40.5%
4596350 109.4.1.362 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1,TPR_8 0.58 41.0 2.65e-01 95.0% 18.7%
4029192 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.58 44.0 2.76e-01 86.7% 40.5%
3547914 70.4.1.5 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › LMF1 0.57 45.0 2.89e-01 88.3% 17.3%
3285126 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.57 50.0 3.74e-01 95.0% 70.0%
3899209 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 48.0 3.48e-01 100.0% 73.8%
3617650 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 45.0 3.04e-01 88.3% 31.2%
3404460 5001.1.1.111 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw 0.57 48.0 2.98e-01 100.0% 36.9%
3202341 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 44.0 2.94e-01 83.3% 84.5%
4880209 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.56 49.0 3.43e-01 98.3% 59.4%
3627712 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 49.0 2.84e-01 100.0% 25.5%
3784848 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.56 44.0 3.18e-01 90.0% 46.3%
4636316 601.1.2.73 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › LMF1 0.56 41.0 3.03e-01 78.3% 51.5%
4201292 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 47.0 3.05e-01 100.0% 65.7%
3667166 304.20.1.2 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 0.55 40.0 2.96e-01 78.3% 81.2%
3355227 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 42.0 2.59e-01 88.3% 75.7%
3615245 109.4.1.621 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 0.55 45.0 2.88e-01 90.0% 41.7%
3746945 5051.1.1.1 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.55 48.0 2.79e-01 100.0% 10.7%
3466238 206.1.1.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.54 48.0 2.86e-01 100.0% 63.1%
4957561 6050.1.1.0 a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.54 39.0 3.37e-01 80.0% 76.2%
3642800 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.54 38.0 3.10e-01 86.7% 39.5%
3699463 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 45.0 3.15e-01 95.0% 53.5%
3823903 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.53 44.0 3.62e-01 95.0% 58.3%
5076203 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.53 46.0 3.24e-01 98.3% 59.0%
3622884 5001.1.1.65 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Serpentine_r_xa 0.53 43.0 2.85e-01 98.3% 40.3%
3279616 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.53 46.0 3.54e-01 96.7% 74.8%
2585 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.53 46.0 3.68e-01 100.0% 49.6%
3929962 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.52 46.0 3.03e-01 100.0% 74.9%
4417105 2004.1.1.77 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87,HerA_C 0.52 48.0 2.84e-01 100.0% 49.8%
4649222 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.52 45.0 3.55e-01 100.0% 46.9%
3600149 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.51 34.0 2.91e-01 70.0% 57.0%
5014365 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.51 40.0 2.39e-01 83.3% 12.3%
3604748 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 44.0 3.03e-01 100.0% 74.9%
3602195 1057.1.1.1 a+b two layers › Endonuclease PI-TkoII domain IV › Endonuclease PI-TkoII domain IV › Endonuclease PI-TkoII domain IV › PI-TkoII_IV 0.50 40.0 3.05e-01 95.0% 36.6%