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KJ094021.1__AHL18656.1__LP114_068__00067

Bact-Vir

KJ094021.1__AHL18656.1__LP114_068__00067

Identity

Accession:
KJ094021 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Homburgvirus› Listeria_phage_LP-114

TaxID: 1458857

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-55
PDB
Domain cluster: rep: MZ605292.1__QYW06518.1__uan_106__00106__D53-98
D2 high residues 66-122
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.74 52.0 4.88e-01 100.0% 60.6%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.70 51.0 5.34e-01 98.2% 90.0%
5cz2G00 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.67 42.0 4.63e-01 98.2% 90.2%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 42.0 3.57e-01 75.4% 84.3%
7n1nB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 37.0 3.61e-01 91.2% 58.7%
4cclA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.57 39.0 2.87e-01 73.7% 46.4%
2qhqA00 3.20.160.10 Alpha Beta › Alpha-Beta Barrel › pseudo Tubby roll › vpa0580 domain like 0.57 50.0 3.95e-01 100.0% 47.9%
6wh0A01 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.56 48.0 3.58e-01 100.0% 39.5%
3fnrA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.56 46.0 3.55e-01 98.2% 77.9%
4oiyA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.54 40.0 3.72e-01 86.0% 65.4%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.53 45.0 3.59e-01 98.2% 79.3%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.53 38.0 3.85e-01 84.2% 76.8%
3l86A00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.52 43.0 2.95e-01 100.0% 94.7%
2v9kA01 1.10.10.2050 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 39.0 4.03e-01 91.2% 100.0%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 36.0 3.35e-01 71.9% 57.7%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.05e-01 100.0% 78.2%
3evyA00 1.20.58.910 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 41.0 3.71e-01 94.7% 72.3%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004578 101.1.1.545 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.81 58.0 5.71e-01 100.0% 71.7%
2628065 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.76 65.0 3.98e-01 100.0% 17.3%
3814458 101.1.2.472 ↗ alpha arrays › HTH › HTH › winged helix domain › A_thal_3526 0.65 52.0 4.64e-01 100.0% 62.5%
4116979 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.63 53.0 5.07e-01 100.0% 80.0%
3183113 101.1.11.111 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF3818 0.62 51.0 4.04e-01 100.0% 66.7%
3930420 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 40.0 3.76e-01 100.0% 58.6%
5038055 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.57 46.0 4.13e-01 94.7% 91.8%
3573660 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.54 42.0 3.67e-01 100.0% 56.5%
3932265 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.53 36.0 3.16e-01 75.4% 81.9%
4640227 131.1.1.3 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.52 38.0 2.96e-01 80.7% 60.0%
3820232 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.52 34.0 2.97e-01 87.7% 44.7%
3785344 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.51 36.0 2.90e-01 75.4% 83.3%
4316396 327.11.2.73 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › HD 0.51 43.0 2.91e-01 100.0% 96.2%
5036318 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.51 39.0 2.65e-01 82.5% 24.4%