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KJ094022.1__AHL18707.1__LP030-3_001__00001

Bact-Vir

KJ094022.1__AHL18707.1__LP030-3_001__00001

Identity

Accession:
KJ094022 ↗
Kingdom:
phage

Quality

69.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Aquingentivirus› Listeria_phage_LP-030-3

TaxID: 1458852

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07261.17 best DnaB_2 42.8 5.10e-11 91.9% 78.4%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i5uA00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.85 63.0 5.87e-01 79.0% 76.6%
2zc2A00 1.10.10.630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like 0.84 68.0 6.38e-01 87.1% 76.0%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.71e-01 71.0% 86.2%
1r71A02 6.10.250.140 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 54.0 5.57e-01 100.0% 100.0%
1vq8P03 1.10.1200.60 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.66 49.0 5.10e-01 82.3% 90.9%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.64 54.0 4.98e-01 100.0% 96.5%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.63 52.0 4.80e-01 96.8% 78.6%
3zh9B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 52.0 5.03e-01 96.8% 84.3%
2ja2A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.60 45.0 4.79e-01 96.8% 100.0%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 41.0 4.35e-01 75.8% 83.6%
1eo0A00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.58 42.0 4.07e-01 83.9% 79.2%
4i5jA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 47.0 3.55e-01 95.2% 78.3%
3nwoA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 46.0 2.98e-01 100.0% 95.3%
2e87A01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 42.0 3.13e-01 87.1% 62.5%
3v53E00 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.51 37.0 3.24e-01 79.0% 83.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4048400 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.90 80.0 7.11e-01 95.2% 72.9%
3114 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.85 63.0 5.96e-01 79.0% 79.7%
3989035 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.84 77.0 6.61e-01 100.0% 69.5%
4498620 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.84 65.0 6.24e-01 82.3% 74.3%
3587918 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.82 74.0 6.41e-01 100.0% 70.5%
4976690 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 51.0 5.48e-01 82.3% 96.0%
4966359 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 58.0 5.62e-01 98.4% 82.9%
4489811 103.17.1.0 ↗ alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain 0.69 48.0 5.19e-01 80.6% 92.0%
4981349 3050.1.1.7 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C 0.67 51.0 4.99e-01 87.1% 75.7%
5038442 3050.1.1.7 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C 0.66 51.0 4.35e-01 87.1% 50.5%
4945730 3050.1.1.0 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain 0.66 50.0 4.45e-01 83.9% 56.7%
4940527 3050.1.1.7 ↗ alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C 0.66 50.0 4.50e-01 85.5% 57.8%
4933655 103.17.1.0 ↗ alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain 0.63 45.0 4.73e-01 91.9% 87.3%
4938496 103.17.1.0 ↗ alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain 0.62 46.0 4.83e-01 96.8% 92.7%
4644218 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.61 43.0 3.90e-01 74.2% 72.9%
2320936 103.17.1.0 ↗ alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain 0.61 44.0 4.72e-01 91.9% 98.0%
3428082 509.1.1.0 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.59 43.0 4.07e-01 77.4% 68.0%
3979101 186.1.1.8 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.55 41.0 3.43e-01 82.3% 79.2%
4661396 212.1.1.22 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.51 42.0 3.01e-01 100.0% 38.2%