Back to structures

KJ135004.2__AJB43752.1__EpBp4_0053__00052

Bact-Vir

KJ135004.2__AJB43752.1__EpBp4_0053__00052

Identity

Accession:
KJ135004 ↗
Kingdom:
phage

Quality

79.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-141
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 34.0 3.85e-01 89.3% 70.5%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.54 42.0 4.06e-01 83.6% 95.7%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.54 48.0 4.43e-01 98.6% 95.6%
8cdaB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 37.0 3.55e-01 70.7% 81.1%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.51 32.0 3.44e-01 99.3% 74.4%
1oxjA02 1.25.40.170 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Smaug, PHAT domain 0.50 29.0 3.27e-01 80.0% 72.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3485540 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.62 43.0 4.00e-01 70.0% 76.6%
4022273 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 43.0 4.30e-01 70.7% 91.0%
3097991 3758.2.1.1 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.61 45.0 3.87e-01 77.9% 96.1%
3535079 109.4.1.88 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MUN 0.57 51.0 3.76e-01 97.1% 38.6%
D2 high residues 148-277
PDB
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d3yB02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.58 44.0 3.78e-01 81.5% 93.1%
3icvA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 42.0 3.25e-01 84.6% 73.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3622456 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.53 31.0 3.40e-01 70.8% 68.2%
D3 medium residues 310-408
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z2mD01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.61 22.0 2.82e-01 74.7% 52.5%
3gw6A03 3.30.2460.10 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain 0.54 21.0 2.69e-01 88.9% 54.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
154136 4059.1.1.0 a+b complex topology › Serpins › Serpins › Serpins 0.52 40.0 2.77e-01 84.8% 95.8%
D4 medium residues 409-460
PDB