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KJ159566.1__AHJ88643.1__GBK2_45__00045
Bact-VirKJ159566.1__AHJ88643.1__GBK2_45__00045
Identity
- Accession:
- KJ159566 ↗
- Kingdom:
- phage
Quality
73.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-98
Domain cluster:
rep: IMGVR_UViG_3300021513_000102-3300021513-Ga0190315_10005481__D86-160
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04492.20 best | Phage_rep_O | 94.8 | 5.20e-27 | 100.0% | 90.5% |
D2
high
residues 207-290
Domain cluster:
rep: MK448727.1__QBX16890.1__Javan291_0014__00014__D161-249
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07261.17 best | DnaB_2 | 33.0 | 5.70e-08 | 89.3% | 74.3% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zc2A00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.88 | 74.0 | 7.78e-01 | 94.0% | 98.7% |
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.85 | 70.0 | 7.34e-01 | 86.9% | 97.4% |
| 1h3lB00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 45.0 | 4.67e-01 | 78.6% | 88.5% |
| 3zh9B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.61 | 45.0 | 4.86e-01 | 94.0% | 94.3% |
| 3oz2A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 45.0 | 3.32e-01 | 83.3% | 91.1% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.59 | 38.0 | 4.00e-01 | 79.8% | 73.3% |
| 2r5uC00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.57 | 42.0 | 3.53e-01 | 85.7% | 46.4% |
| 4z7xB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 43.0 | 3.35e-01 | 85.7% | 47.6% |
| 1a87A02 | 1.10.490.30 | Mainly Alpha › Orthogonal Bundle › Globin-like › Colicin | 0.51 | 39.0 | 3.02e-01 | 82.1% | 92.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587918 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.87 | 77.0 | 7.40e-01 | 100.0% | 83.2% |
| 4048400 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.86 | 75.0 | 7.52e-01 | 100.0% | 91.8% |
| 3114 | 4230.1.1.3 ↗ | alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 | 0.85 | 69.0 | 7.36e-01 | 85.7% | 100.0% |
| 3941716 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.64 | 56.0 | 4.91e-01 | 100.0% | 64.6% |
| 4074758 | 5065.1.1.1 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 | 0.60 | 50.0 | 3.61e-01 | 96.4% | 84.4% |
| 3255393 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.59 | 52.0 | 3.31e-01 | 100.0% | 39.3% |
| 4405860 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.59 | 45.0 | 4.75e-01 | 94.0% | 94.7% |
| 3375592 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 44.0 | 4.38e-01 | 88.1% | 78.9% |
| 3977998 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.58 | 45.0 | 3.68e-01 | 85.7% | 58.8% |
| 3530132 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 43.0 | 4.28e-01 | 100.0% | 82.2% |
| 3679313 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.54 | 44.0 | 4.24e-01 | 94.0% | 82.0% |
| 4982983 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.51 | 40.0 | 3.92e-01 | 88.1% | 100.0% |
| 3809679 | 148.1.2.1 ↗ | alpha arrays › Histone-like › Histone-related › double Clp-N › Clp_N | 0.51 | 45.0 | 4.01e-01 | 98.8% | 80.0% |
| 3275276 | 3621.1.1.0 ↗ | alpha arrays › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain | 0.51 | 43.0 | 3.85e-01 | 98.8% | 100.0% |
| 4945647 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.50 | 38.0 | 3.65e-01 | 83.3% | 88.0% |