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KJ173786.1__AHL18572.1__ISF9_102__00102

Bact-Vir

KJ173786.1__AHL18572.1__ISF9_102__00102

Identity

Accession:
KJ173786 ↗
Kingdom:
phage

Quality

89.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-53
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.85 68.0 5.90e-01 100.0% 58.9%
2o7gA00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.80 65.0 5.42e-01 90.2% 52.3%
3teqB00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 54.0 4.26e-01 94.1% 36.6%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.78 65.0 5.80e-01 100.0% 66.2%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.78 54.0 3.51e-01 72.5% 29.7%
2bg1A01 3.90.1310.40 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.76 64.0 5.58e-01 96.1% 62.3%
3jrqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.74 64.0 4.06e-01 100.0% 18.8%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.71 46.0 4.62e-01 82.4% 66.7%
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.70 53.0 4.57e-01 84.3% 53.7%
4ywoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 58.0 3.87e-01 100.0% 25.0%
2nx4C00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.67 58.0 3.97e-01 100.0% 33.2%
5u4nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 55.0 3.42e-01 100.0% 86.3%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.66 57.0 5.17e-01 96.1% 89.7%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 56.0 3.57e-01 100.0% 90.5%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 45.0 2.76e-01 70.6% 11.6%
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.66 53.0 4.71e-01 96.1% 62.5%
5uckB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 53.0 3.42e-01 100.0% 91.0%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.65 51.0 4.25e-01 96.1% 48.9%
2b5dX02 1.20.1430.10 Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain 0.64 52.0 4.00e-01 88.2% 68.4%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 55.0 3.85e-01 100.0% 29.0%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 52.0 3.69e-01 96.1% 29.8%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.63 46.0 4.19e-01 86.3% 56.2%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.63 41.0 4.02e-01 84.3% 60.7%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 52.0 4.27e-01 100.0% 90.2%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 47.0 4.10e-01 82.4% 93.5%
5k29A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 48.0 4.00e-01 92.2% 47.4%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.61 45.0 3.21e-01 82.4% 28.0%
2nr7A00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.60 51.0 3.47e-01 96.1% 60.8%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.60 50.0 4.67e-01 100.0% 81.5%
3cdlB02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 53.0 3.85e-01 98.0% 69.9%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 50.0 4.26e-01 96.1% 61.2%
2nr9A00 1.20.1540.10 Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like 0.59 47.0 3.34e-01 100.0% 27.6%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.58 47.0 4.27e-01 100.0% 65.4%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.57 49.0 4.16e-01 92.2% 58.7%
2dk4A00 4.10.280.110 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain 0.57 47.0 4.22e-01 96.1% 75.0%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 50.0 3.73e-01 96.1% 42.5%
4tkrA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.56 46.0 3.29e-01 100.0% 32.8%
2d2sA02 1.20.58.1220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain 0.56 49.0 3.91e-01 100.0% 49.5%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.56 46.0 4.11e-01 92.2% 67.6%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.55 39.0 3.37e-01 98.0% 48.7%
6oi7A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 45.0 3.17e-01 100.0% 26.5%
1grjA01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.55 48.0 4.15e-01 94.1% 67.6%
2hsnA02 1.20.1050.110 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 39.0 3.12e-01 76.5% 37.4%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.53 45.0 4.12e-01 96.1% 73.5%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.53 42.0 3.41e-01 88.2% 45.1%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 45.0 3.97e-01 100.0% 67.1%
7oq4Z01 1.20.120.950 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein DUF5062 0.51 45.0 3.66e-01 100.0% 62.2%
4fidA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.84e-01 92.2% 54.9%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 45.0 3.58e-01 100.0% 59.4%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3177607 109.4.1.163 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SYMPK_PTA1_N 0.86 55.0 3.28e-01 72.5% 10.1%
3591291 1076.1.1.1 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.85 75.0 4.88e-01 100.0% 24.6%
3596560 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.82 73.0 5.52e-01 100.0% 46.2%
3974778 191.1.1.11 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 0.81 66.0 4.75e-01 88.2% 87.7%
3734521 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.81 73.0 4.22e-01 100.0% 12.7%
3275693 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.80 71.0 4.65e-01 100.0% 23.7%
3401669 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.80 71.0 4.35e-01 100.0% 16.7%
3943353 3831.1.1.0 alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 0.79 69.0 5.77e-01 100.0% 60.0%
3889356 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.79 67.0 4.24e-01 98.0% 19.8%
3269813 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.79 69.0 4.22e-01 100.0% 16.7%
5041251 3457.1.1.0 alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease 0.78 70.0 4.86e-01 100.0% 97.5%
3838282 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.78 68.0 5.50e-01 96.1% 55.8%
3789792 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.78 62.0 5.07e-01 88.2% 55.8%
4014292 5076.1.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.78 70.0 4.27e-01 100.0% 17.0%
3829752 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.78 70.0 4.24e-01 100.0% 17.0%
4520394 5063.1.1.1 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.76 66.0 6.02e-01 100.0% 91.3%
3614296 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.75 66.0 4.04e-01 100.0% 16.8%
3507860 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 61.0 4.82e-01 98.0% 43.8%
3716098 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.74 64.0 3.92e-01 98.0% 31.9%
3692508 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.74 64.0 5.18e-01 100.0% 52.0%
3942799 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.73 62.0 4.00e-01 96.1% 33.9%
3909150 5063.1.1.15 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › OCIA 0.72 63.0 5.58e-01 100.0% 74.7%
3398509 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.71 63.0 3.88e-01 100.0% 32.0%
4078503 152.1.2.1 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.69 55.0 5.07e-01 94.1% 67.7%
3347379 3470.1.1.26 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 0.69 61.0 5.64e-01 100.0% 81.5%
4358519 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.69 55.0 4.51e-01 100.0% 47.0%
2832675 2006.1.4.8 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 0.68 59.0 3.96e-01 100.0% 24.9%
3726116 5051.1.1.2 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease 0.68 60.0 3.43e-01 100.0% 12.1%
3299872 5063.1.1.3 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › NADH-u_ox-rdase 0.68 57.0 4.88e-01 100.0% 57.6%
3919989 192.5.1.19 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › OCIA 0.68 59.0 5.12e-01 100.0% 70.0%
4020839 5051.1.1.0 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like 0.68 58.0 3.37e-01 100.0% 45.4%
3739839 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.67 58.0 4.59e-01 100.0% 47.3%
5060951 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.67 57.0 3.34e-01 94.1% 11.8%
3590567 2002.1.1.50 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.67 57.0 3.59e-01 100.0% 90.2%
3389329 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.65 58.0 3.54e-01 100.0% 16.2%
3587991 2002.1.1.50 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › F_bP_aldolase 0.65 53.0 3.40e-01 100.0% 88.9%
5052614 3831.1.1.0 alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 0.63 52.0 4.22e-01 100.0% 46.4%
3212747 3054.1.1.2 alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › DUF4473 0.62 52.0 4.73e-01 94.1% 70.0%
4149728 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.61 52.0 4.59e-01 100.0% 65.0%
3973303 1049.2.1.3 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › PF26776 0.61 51.0 4.04e-01 100.0% 43.5%
3698292 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.61 51.0 3.74e-01 96.1% 70.3%
3726674 5051.1.1.2 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease 0.61 52.0 2.99e-01 100.0% 9.8%
4981035 5058.1.1.16 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.60 54.0 4.97e-01 100.0% 95.4%
5039692 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.60 52.0 4.29e-01 100.0% 56.8%
5017842 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.60 54.0 4.53e-01 100.0% 62.4%
4431704 152.1.2.1 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.60 47.0 4.23e-01 86.3% 75.7%
3733951 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.59 48.0 4.41e-01 94.1% 68.6%
3946253 5051.1.1.2 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease 0.58 48.0 2.88e-01 100.0% 11.2%
3630322 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 49.0 2.84e-01 100.0% 19.8%