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KJ395778.1__AHJ87858.1__PVA1_11__00005

Bact-Vir

KJ395778.1__AHJ87858.1__PVA1_11__00005

Identity

Accession:
KJ395778 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_PVA1

TaxID: 1461743

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-111
PDB
Domain cluster: rep: NC_013599.1__YP_003344925.1__Xfas53_gene35__00035__D4-118
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11650.15 best P22_Tail-4 40.9 3.20e-10 100.0% 69.2%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.87 81.0 7.23e-01 100.0% 73.1%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 38.0 4.44e-01 88.1% 89.0%
2zmdA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.62 37.0 3.22e-01 89.9% 37.5%
3wctD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.58 46.0 4.26e-01 87.2% 95.9%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 46.0 4.21e-01 98.2% 67.1%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 38.0 4.15e-01 95.4% 91.6%
4dk4B00 1.10.4010.10 Mainly Alpha › Orthogonal Bundle › all-alpha NTP pyrophosphatase fold › Type II deoxyuridine triphosphatase 0.55 49.0 3.96e-01 100.0% 79.3%
3dd7C00 1.20.120.1870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain 0.55 40.0 3.90e-01 97.2% 68.0%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 41.0 3.94e-01 81.7% 90.1%
1pulA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 36.0 3.68e-01 89.0% 70.9%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 34.0 4.09e-01 93.6% 98.6%
4yozA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 46.0 3.94e-01 100.0% 63.3%
4o7iA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 36.0 3.09e-01 73.4% 68.1%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.51 36.0 3.81e-01 87.2% 84.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3108018 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.87 83.0 7.24e-01 100.0% 75.7%
1429455 4275.1.1.4 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › P22_Tail-4 0.86 80.0 7.15e-01 100.0% 73.3%
5026333 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 44.0 4.33e-01 84.4% 63.5%
3992291 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 39.0 2.80e-01 90.8% 21.3%
4045825 1166.1.1.1 ↗ alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC 0.61 34.0 2.88e-01 82.6% 31.7%
5000893 7073.1.1.0 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme 0.61 50.0 4.93e-01 92.7% 82.6%
3965185 633.2.1.0 ↗ alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.56 33.0 4.02e-01 99.1% 91.4%
3707160 219.1.1.15 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU 0.55 44.0 3.92e-01 93.6% 59.4%
3977178 4125.1.1.4 ↗ alpha superhelices › BH3980-like › BH3980-like › BH3980-like › NA37 0.54 38.0 3.92e-01 100.0% 76.2%
4004443 4953.2.1.3 ↗ beta barrels › L-aspartase C-terminal domain-like › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › NA37 0.54 38.0 3.85e-01 100.0% 72.7%
3408298 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.53 40.0 3.51e-01 78.9% 54.4%
5030894 2002.1.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Enolase_C 0.53 44.0 3.27e-01 91.7% 45.6%
4323060 323.1.1.7 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase 0.53 38.0 3.05e-01 75.2% 77.2%
5049110 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.52 46.0 3.55e-01 100.0% 64.4%
3622578 604.28.1.1 ↗ alpha bundles › Spectrin repeat-like › E3 ubiquitin-protein ligase SHPRH second helical domain › E3 ubiquitin-protein ligase SHPRH second helical domain › SHPRH_helical-2nd 0.52 42.0 3.33e-01 89.9% 77.1%
2701215 1166.1.1.1 ↗ alpha arrays › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › Potassium-transporting ATPase KdpC subunit › KdpC 0.51 33.0 2.81e-01 90.8% 38.4%
5046548 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.51 45.0 3.54e-01 100.0% 61.3%