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KJ410740.1__AHV82155.1__X__00030

Bact-Vir

KJ410740.1__AHV82155.1__X__00030

Identity

Accession:
KJ410740 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_S-EIVl

TaxID: 1468179

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-54
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.93e-01 100.0% 28.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599572 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 47.0 2.81e-01 100.0% 38.3%
3542657 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.53 44.0 3.11e-01 100.0% 44.7%
3673860 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.51 37.0 3.25e-01 83.0% 48.9%
4942109 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.51 43.0 3.24e-01 100.0% 80.7%
3899247 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.50 42.0 2.98e-01 100.0% 44.9%
D2 medium residues 70-158
PDB
Domain cluster: rep: MT408532.1__QJT70046.1__SynMITS9220M01_033__00030__D210-293
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4976671 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.60 33.0 3.65e-01 89.9% 67.1%
5045830 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.59 31.0 3.47e-01 89.9% 64.3%
4928895 79.1.1.0 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.53 47.0 3.25e-01 94.4% 31.3%
3335354 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.52 35.0 2.99e-01 70.8% 85.8%
D3 medium residues 194-280
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.86 42.0 5.45e-01 71.3% 82.4%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3412645 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.81 52.0 5.75e-01 79.3% 81.4%
3516371 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.70 50.0 4.49e-01 88.5% 55.7%
3241120 64.3.1.4 ↗ beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › Tmp39 0.66 46.0 5.32e-01 79.3% 96.9%
3598454 229.1.1.0 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.52 39.0 3.66e-01 79.3% 93.3%
D4 medium residues 451-570
PDB
Domain cluster: rep: LT992259.1__SPL81318.1__X__00027__D455-597
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A03 3.90.1580.10 Alpha Beta › Alpha-Beta Complex › paralog of FGE (formylglycine-generating enzyme) › paralog of FGE (formylglycine-generating enzyme) 0.71 39.0 3.36e-01 97.5% 38.0%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002641 209.1.2.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like 0.89 86.0 5.82e-01 100.0% 34.7%
4936908 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.88 68.0 5.04e-01 100.0% 35.8%
2080140 209.1.2.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.83 78.0 5.31e-01 100.0% 48.0%
7356 209.1.2.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like 0.71 41.0 3.33e-01 100.0% 33.8%
3486437 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.68 40.0 3.84e-01 100.0% 50.0%
3594204 209.1.1.11 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › DUF5075 0.54 49.0 4.18e-01 100.0% 69.2%