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KJ410740.1__AHV82162.1__X__00037

Bact-Vir

KJ410740.1__AHV82162.1__X__00037

Identity

Accession:
KJ410740 ↗
Kingdom:
phage

Quality

87.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_S-EIVl

TaxID: 1468179

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 27-87
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dykA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.87 56.0 4.29e-01 77.0% 32.3%
3ocpB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.86 53.0 4.01e-01 70.5% 29.7%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.85 53.0 5.65e-01 73.8% 73.6%
2az0B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.84 56.0 5.28e-01 70.5% 59.2%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.81 62.0 6.02e-01 82.0% 79.4%
3t98B00 6.10.140.1350 Special › Helix non-globular › Helix Hairpins › 0.80 65.0 5.69e-01 85.2% 62.8%
4rz7A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.79 49.0 3.90e-01 72.1% 32.2%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 43.0 4.46e-01 98.4% 58.6%
5kbwB00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.71 59.0 4.30e-01 98.4% 33.3%
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.70 54.0 3.43e-01 82.0% 26.9%
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.68 49.0 4.56e-01 83.6% 60.0%
1ngkB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 48.0 3.81e-01 75.4% 37.0%
4griA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.66 43.0 4.54e-01 72.1% 77.4%
3o60A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 49.0 3.54e-01 88.5% 27.5%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 43.0 3.92e-01 73.8% 57.6%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.62 53.0 4.24e-01 95.1% 60.5%
4j05A00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.62 50.0 3.12e-01 96.7% 92.4%
1dc1A02 1.10.238.90 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Restriction endonuclease BsobI, helical domain 0.62 45.0 4.07e-01 78.7% 62.5%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 44.0 3.81e-01 77.0% 76.7%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 38.0 2.95e-01 72.1% 27.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3213526 192.5.1.14 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.92 63.0 5.08e-01 78.7% 41.0%
3712152 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.81 57.0 5.98e-01 72.1% 80.0%
4618832 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.79 61.0 4.78e-01 83.6% 41.6%
5055477 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 56.0 5.05e-01 78.7% 56.2%
4540106 3396.1.1.3 ↗ extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › DUF4481 0.77 66.0 6.07e-01 100.0% 72.5%
2984622 3396.1.1.1 ↗ extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N 0.75 59.0 5.69e-01 95.1% 75.4%
3200876 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.74 60.0 5.22e-01 86.9% 91.1%
3702524 4004.1.1.1 ↗ beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › YegS_C 0.73 59.0 3.79e-01 85.2% 66.8%
3517407 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.73 54.0 5.15e-01 78.7% 68.6%
2622460 3396.1.1.1 ↗ extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N 0.72 58.0 5.61e-01 96.7% 78.6%
3067828 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.72 50.0 4.66e-01 83.6% 57.7%
3183072 109.4.1.2187 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_14, HAT_PRP39_N, HAT_PRP39_C 0.71 61.0 3.83e-01 100.0% 23.8%
2814929 150.1.1.14 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like 0.71 47.0 4.58e-01 80.3% 61.8%
3599587 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 59.0 4.11e-01 91.8% 54.6%
4018714 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.69 50.0 4.73e-01 78.7% 69.3%
4261924 3352.1.1.2 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT_2 0.68 60.0 3.68e-01 96.7% 27.5%
3993655 1008.1.1.0 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain 0.67 58.0 4.41e-01 100.0% 96.0%
3663074 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.65 46.0 3.78e-01 80.3% 41.8%
3626373 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.60 38.0 3.33e-01 70.5% 42.1%