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KJ410740.1__AHV82205.1__X__00080

Bact-Vir

KJ410740.1__AHV82205.1__X__00080

Identity

Accession:
KJ410740 ↗
Kingdom:
phage

Quality

52.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 377-432
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 60.0 5.34e-01 100.0% 97.7%
3zh9B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.71 53.0 4.86e-01 78.6% 71.4%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 61.0 5.89e-01 98.2% 87.5%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 56.0 5.35e-01 94.6% 89.6%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.75e-01 92.9% 98.8%
2zg6A02 1.10.150.660 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.66 57.0 5.24e-01 96.4% 93.1%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 55.0 5.09e-01 91.1% 85.7%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.64 57.0 4.53e-01 100.0% 75.0%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 55.0 4.16e-01 94.6% 96.2%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.64 39.0 3.51e-01 100.0% 44.7%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 54.0 4.12e-01 100.0% 56.5%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.61 47.0 3.82e-01 89.3% 65.8%
2fdrA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 50.0 4.73e-01 92.9% 85.1%
3lpaA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.58 50.0 3.05e-01 96.4% 17.4%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.57 43.0 4.57e-01 92.9% 97.9%
3djbA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.56 49.0 4.13e-01 100.0% 95.8%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 48.0 4.37e-01 98.2% 89.6%
2gytA01 1.10.287.2070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 48.0 4.50e-01 100.0% 83.1%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 46.0 4.35e-01 92.9% 75.0%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 49.0 3.67e-01 100.0% 56.1%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 45.0 3.96e-01 96.4% 73.3%
4i5jA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 45.0 3.42e-01 100.0% 93.0%
1gyzA00 1.10.1900.20 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Ribosomal protein L20, C-terminal domain 0.53 39.0 3.86e-01 82.1% 98.3%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 45.0 4.12e-01 94.6% 77.6%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 46.0 4.15e-01 100.0% 73.1%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 43.0 4.01e-01 91.1% 95.8%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 37.0 3.27e-01 83.9% 63.6%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3925622 603.1.1.97 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.78 70.0 4.57e-01 100.0% 26.0%
4033963 4040.1.1.1 alpha bundles › Fic-like › Fic-like › Fic-like › Fic 0.76 64.0 3.97e-01 91.1% 54.8%
3587219 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.73 63.0 4.16e-01 92.9% 25.9%
3283427 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 58.0 4.42e-01 87.5% 44.6%
4644218 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.72 63.0 5.51e-01 100.0% 74.1%
4974262 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.70 48.0 4.72e-01 71.4% 85.0%
3741362 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.70 62.0 4.07e-01 100.0% 52.6%
4961037 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.69 52.0 5.27e-01 80.4% 100.0%
5004958 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.69 49.0 4.94e-01 75.0% 100.0%
4594380 148.1.3.49 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid 0.68 49.0 4.37e-01 76.8% 61.3%
5054584 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.68 59.0 4.13e-01 98.2% 50.0%
3715735 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.68 53.0 4.75e-01 87.5% 76.2%
3490008 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 41.0 3.97e-01 98.2% 53.8%
3784931 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.67 60.0 3.79e-01 100.0% 50.7%
4982784 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.67 46.0 4.52e-01 71.4% 85.0%
3472278 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.67 41.0 3.77e-01 98.2% 46.7%
3949687 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.66 49.0 4.13e-01 94.6% 47.4%
4990172 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.66 57.0 3.96e-01 98.2% 46.7%
3704289 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.66 57.0 5.11e-01 98.2% 96.2%
3519328 148.1.3.18 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.64 46.0 3.86e-01 75.0% 53.7%
5066354 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 48.0 4.85e-01 80.4% 92.7%
None 0.63 47.0 3.22e-01 98.2% 22.5%
3735460 103.11.1.1 alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N 0.63 46.0 4.70e-01 94.6% 80.0%
5048919 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.62 55.0 5.37e-01 98.2% 88.3%
5056599 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.62 54.0 3.94e-01 96.4% 90.7%
4341780 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.62 47.0 4.56e-01 100.0% 72.3%
1867991 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.62 49.0 4.47e-01 92.9% 68.8%
3431353 1128.1.1.10 alpha bundles › LYR protein › LYR protein › LYR protein › VIN3_C 0.61 44.0 4.08e-01 76.8% 84.3%
4588724 148.1.3.49 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid 0.60 52.0 4.66e-01 94.6% 93.3%
4163949 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 51.0 4.52e-01 94.6% 88.7%
5067754 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 43.0 4.38e-01 92.9% 80.0%
3793751 108.1.1.107 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7, EF-hand_8 0.58 47.0 4.09e-01 94.6% 58.8%
3940870 3069.1.1.1 alpha arrays › BART › BART › BART › ARL2_Bind_BART 0.57 46.0 3.49e-01 89.3% 75.6%
3279253 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 48.0 4.44e-01 92.9% 94.3%
3914715 605.1.1.235 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › BicD 0.55 45.0 4.11e-01 89.3% 80.0%
3878853 4044.1.1.13 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › BicD 0.55 45.0 3.92e-01 89.3% 70.6%
4093240 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.55 40.0 4.11e-01 100.0% 81.8%
1175633 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 46.0 4.13e-01 94.6% 81.0%
5026703 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.52 40.0 2.58e-01 94.6% 21.4%
4936137 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.51 42.0 3.99e-01 91.1% 96.9%
3658080 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.51 43.0 3.14e-01 98.2% 47.3%
D2 high residues 636-689
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p5aC00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.80 57.0 3.73e-01 75.9% 18.4%
3k4iC02 1.20.5.3070 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 52.0 6.05e-01 75.9% 97.4%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.78 57.0 3.35e-01 77.8% 11.2%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.77 57.0 4.37e-01 100.0% 35.2%
6kwaA01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.76 67.0 4.25e-01 98.1% 30.1%
4lctB00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.74 59.0 3.54e-01 85.2% 19.0%
2i7nA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.70 63.0 4.48e-01 100.0% 60.0%
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.70 61.0 3.67e-01 100.0% 16.3%
5jicA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.69 62.0 4.27e-01 100.0% 70.9%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.69 48.0 4.49e-01 87.0% 57.4%
1zymA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.68 58.0 4.48e-01 98.1% 87.3%
5hdiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 60.0 3.56e-01 100.0% 15.6%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 57.0 3.58e-01 100.0% 26.5%
1kq4A00 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 54.0 3.58e-01 92.6% 27.1%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 49.0 3.53e-01 92.6% 66.4%
6o9aA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 46.0 3.29e-01 100.0% 73.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982432 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.84 61.0 5.45e-01 77.8% 60.0%
4023890 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.83 57.0 4.97e-01 72.2% 50.6%
4961022 5073.1.2.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.82 55.0 3.62e-01 70.4% 19.7%
3414458 6026.1.1.1 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.81 60.0 5.18e-01 77.8% 53.8%
4938196 5054.1.1.6 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.78 61.0 4.83e-01 83.3% 72.4%
4016004 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.77 68.0 4.70e-01 100.0% 35.0%
3321773 10.12.1.73 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › DIOX_N 0.76 66.0 4.45e-01 98.1% 29.3%
4655609 5060.1.1.1 alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 0.75 66.0 4.69e-01 98.1% 87.7%
4425237 5060.1.1.1 alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 0.75 67.0 4.33e-01 100.0% 59.1%
4970749 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 67.0 4.94e-01 100.0% 50.4%
3742534 622.4.1.52 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › TMEM254 0.74 66.0 5.37e-01 100.0% 76.0%
4154261 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.73 67.0 3.92e-01 100.0% 15.1%
3924660 604.1.1.140 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27005 0.71 63.0 5.39e-01 100.0% 64.7%
4466948 5060.1.1.2 alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › DUF2764 0.66 59.0 4.19e-01 100.0% 74.4%
D3 medium residues 208-257
PDB