←Back to structures

KJ410740.1__AHV82229.1__X__00104

Bact-Vir

KJ410740.1__AHV82229.1__X__00104

Identity

Accession:
KJ410740 ↗
Kingdom:
phage

Quality

76.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_S-EIVl

TaxID: 1468179

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-179_192-247
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dxzA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.68 37.0 4.74e-01 96.8% 90.1%
5h4cB00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.65 46.0 5.31e-01 98.9% 100.0%
5hbaA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.65 46.0 5.29e-01 98.9% 100.0%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.65 40.0 4.92e-01 99.5% 98.3%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 31.0 3.84e-01 98.9% 71.7%
4dzgA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.65 36.0 4.51e-01 94.7% 89.4%
3kptA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 43.0 4.82e-01 96.8% 88.7%
4p02B03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 45.0 5.08e-01 98.4% 96.5%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 42.0 4.63e-01 96.8% 86.3%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.61 41.0 4.83e-01 100.0% 97.7%
4zelB01 2.60.120.310 Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain 0.61 45.0 4.97e-01 97.3% 97.2%
6mkbA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.61 49.0 5.32e-01 100.0% 100.0%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.60 45.0 4.78e-01 99.5% 88.3%
1tnrA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.60 45.0 4.99e-01 97.3% 100.0%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 42.0 4.56e-01 94.7% 86.0%
3es4A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 28.0 3.44e-01 97.3% 68.1%
3ghmA03 2.60.120.830 Mainly Beta › Sandwich › Jelly Rolls › 0.59 40.0 4.56e-01 99.5% 90.1%
1e57B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 46.0 4.72e-01 100.0% 84.2%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 5.10e-01 100.0% 98.2%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 41.0 4.70e-01 95.7% 98.5%
4igbB02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 4.33e-01 94.7% 88.8%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 40.0 4.53e-01 96.3% 96.5%
2izwC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 4.60e-01 100.0% 80.8%
3bfqG00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.56 38.0 4.45e-01 98.4% 99.2%
4r7vA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 37.0 4.08e-01 97.3% 83.2%
5ewnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 5.02e-01 100.0% 97.3%
4nwvA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 4.70e-01 100.0% 89.7%
3w57A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 33.0 4.21e-01 72.2% 100.0%
1k3iA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 41.0 4.47e-01 97.3% 93.5%
4gucA00 2.60.40.3720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 28.0 3.41e-01 94.7% 74.8%
2ztnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 4.94e-01 100.0% 95.8%
4kq7A02 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.54 45.0 4.37e-01 98.9% 78.2%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 4.42e-01 92.5% 92.5%
5y4mA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 4.58e-01 98.4% 100.0%
7chkB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 37.0 4.31e-01 95.2% 100.0%
1wkyA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 40.0 4.49e-01 95.7% 100.0%
4geiA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 36.0 4.02e-01 96.3% 88.2%
3jb8A00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.73e-01 100.0% 95.7%
4c91A04 2.60.120.1620 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 4.30e-01 97.3% 84.1%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 4.38e-01 98.4% 100.0%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 47.0 3.97e-01 100.0% 76.8%
1f2nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 4.35e-01 100.0% 84.4%
2c9kA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 38.0 4.06e-01 98.4% 89.0%
4pt6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 4.25e-01 96.3% 98.1%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 46.0 4.18e-01 100.0% 82.0%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 40.0 4.38e-01 97.3% 100.0%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 46.0 3.92e-01 100.0% 75.7%
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 33.0 3.99e-01 72.7% 100.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1714450 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.73 36.0 5.03e-01 98.4% 94.7%
4035909 10.3.1.2 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.67 47.0 5.36e-01 100.0% 97.8%
5064594 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 41.0 4.50e-01 94.7% 75.5%
4966022 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 44.0 5.11e-01 97.9% 100.0%
3405713 10.32.1.231 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › APD1-4_M 0.62 36.0 4.61e-01 97.3% 100.0%
3282993 10.32.1.31 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PepX_C 0.61 44.0 4.86e-01 98.4% 92.0%
3522617 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.60 42.0 4.69e-01 97.3% 89.3%
3608412 10.34.1.0 ↗ beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain 0.60 25.0 3.65e-01 94.1% 87.5%
4406146 10.12.1.53 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_3 0.59 38.0 3.71e-01 98.9% 57.6%
3864012 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.58 48.0 5.03e-01 99.5% 94.8%
3978758 10.4.1.42 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Ig_GpJ_C 0.57 39.0 4.53e-01 98.4% 99.2%
5009883 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 42.0 4.49e-01 96.8% 90.0%
2810269 10.2.1.48 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › DUF2961 0.56 46.0 4.49e-01 99.5% 79.4%
3460039 10.12.1.16 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy 0.56 39.0 3.12e-01 100.0% 35.7%
4959127 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 31.0 3.73e-01 96.3% 84.3%
3710748 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 39.0 3.97e-01 95.2% 73.5%
3592534 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 39.0 3.99e-01 95.7% 75.0%
2665487 10.2.1.103 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Vp24_capsid 0.53 39.0 4.33e-01 98.4% 96.6%
5034688 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.53 33.0 3.63e-01 97.9% 76.6%
4012761 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 48.0 4.23e-01 97.3% 96.7%
1866058 10.2.1.7 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Viral_coat 0.53 47.0 4.73e-01 100.0% 95.7%
1117738 10.32.1.52 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GH115_C 0.52 42.0 4.29e-01 97.3% 84.6%
2813830 10.32.1.52 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GH115_C 0.52 42.0 4.28e-01 97.3% 84.1%
3766325 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.52 43.0 4.14e-01 100.0% 77.6%
3317101 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 36.0 3.70e-01 72.7% 74.3%
5055269 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 4.12e-01 99.5% 100.0%
3885057 10.32.1.214 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BRINP 0.51 42.0 4.35e-01 98.9% 95.9%
3926555 109.3.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.51 42.0 3.29e-01 95.7% 40.7%
1114663 10.2.1.22 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Peptidase_A6 0.51 46.0 3.83e-01 100.0% 71.5%
3594177 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 36.0 4.13e-01 73.8% 99.3%