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KJ452292.1__AIB56303.1__X__00052

Bact-Vir

KJ452292.1__AIB56303.1__X__00052

Identity

Accession:
KJ452292 ↗
Kingdom:
phage

Quality

65.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Biseptimavirus› Staphylococcus_phage_23MRA

TaxID: 1505027

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 331-446
PDB
Domain cluster: rep: LR990834.1__CAD7757509.1__ATHO_20__00020__D167-317
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01551.30 best Peptidase_M23 69.5 3.10e-19 83.6% 99.0%
D2 high residues 462-566
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01464.26 best SLT 26.2 7.10e-06 81.9% 54.7%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1am7A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.75 62.0 5.38e-01 86.7% 92.2%
4yibA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.72 67.0 5.75e-01 99.0% 84.8%
1qsaA03 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.72 67.0 5.57e-01 100.0% 82.1%
2dqaA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 62.0 5.85e-01 93.3% 91.9%
6ukcA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 65.0 5.96e-01 100.0% 85.0%
6cfcA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.69 62.0 5.29e-01 95.2% 85.7%
4yf2A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.67 61.0 5.67e-01 100.0% 84.6%
1iizA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.66 60.0 5.79e-01 100.0% 88.3%
2rjiA00 1.10.1740.170 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Erythrocyte binding antigen 175 region VI 0.63 38.0 4.13e-01 96.2% 73.8%
3tl4X01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.62 36.0 3.56e-01 100.0% 51.8%
4xcgA02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.58 37.0 3.69e-01 100.0% 60.2%
2yxlA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.56 40.0 3.60e-01 76.2% 59.9%
1wixA01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.53 46.0 4.13e-01 98.1% 85.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4034362 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.99 96.0 9.41e-01 99.0% 100.0%
3960956 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.93 89.0 8.42e-01 100.0% 95.8%
3288544 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.90 84.0 8.14e-01 97.1% 90.4%
3587750 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.87 80.0 8.07e-01 99.0% 97.1%
4032309 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.83 75.0 7.39e-01 100.0% 92.7%
2647598 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.79 73.0 5.99e-01 100.0% 90.1%
3582448 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.78 64.0 5.89e-01 100.0% 69.2%
3281310 235.1.1.19 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT_2 0.78 72.0 5.63e-01 100.0% 75.7%
3260862 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.75 64.0 6.31e-01 100.0% 85.5%
3289790 235.1.1.23 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 0.72 66.0 5.75e-01 100.0% 78.1%
3944103 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.72 67.0 5.53e-01 100.0% 82.2%
3971115 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.71 67.0 5.60e-01 100.0% 87.1%
4321901 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.69 65.0 5.26e-01 100.0% 84.9%
3284481 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.67 61.0 5.54e-01 100.0% 85.7%
3245104 235.1.1.12 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Destabilase 0.63 58.0 5.47e-01 99.0% 93.6%
4522025 3584.1.1.1 ↗ alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger 0.57 32.0 2.60e-01 99.0% 27.1%
D3 medium residues 11-121
PDB
D4 medium residues 122-206
PDB
Domain cluster: rep: JN700521.1__AFD22336.1__X__00049__D450-512
D5 medium residues 250-308
PDB
D6 medium residues 574-663
PDB