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KJ473422.1__AHY26638.1__vB_AbaM_Acibel004_23__00023

Bact-Vir

KJ473422.1__AHY26638.1__vB_AbaM_Acibel004_23__00023

Identity

Accession:
KJ473422 ↗
Kingdom:
phage

Quality

74.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saclayvirus› Acinetobacter_phage_vB_AbaM_Acibel004

TaxID: 1481186

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-48
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.86 75.0 6.72e-01 100.0% 70.1%
2cqsA04 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.86 74.0 4.32e-01 100.0% 11.9%
2qvaA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.85 70.0 6.80e-01 95.7% 83.0%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.85 72.0 5.24e-01 95.7% 88.0%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.84 74.0 5.37e-01 100.0% 37.3%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.83 73.0 6.00e-01 100.0% 70.6%
2xkoC02 6.10.250.870 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.83 60.0 6.52e-01 78.7% 100.0%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 61.0 4.69e-01 87.2% 35.8%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.82 70.0 6.34e-01 100.0% 70.8%
2v0cA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.81 68.0 4.70e-01 95.7% 30.8%
1j30A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.81 69.0 4.97e-01 100.0% 33.3%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.81 67.0 5.85e-01 97.9% 60.5%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.80 67.0 5.45e-01 97.9% 50.0%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.80 66.0 5.69e-01 95.7% 58.4%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 58.0 5.41e-01 80.9% 64.4%
1o3uA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.77 65.0 4.92e-01 100.0% 38.3%
2ra1A02 1.20.58.780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 62.0 5.56e-01 95.7% 64.7%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.76 63.0 5.00e-01 100.0% 44.3%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.76 59.0 5.60e-01 100.0% 72.9%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.74 62.0 4.71e-01 100.0% 42.1%
6umqA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.74 63.0 4.81e-01 100.0% 72.2%
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.71 52.0 4.63e-01 80.9% 100.0%
6he1B01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.70 52.0 4.89e-01 95.7% 64.1%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.67 55.0 5.16e-01 100.0% 75.8%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.65 52.0 4.85e-01 100.0% 73.4%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.60 49.0 4.76e-01 97.9% 80.8%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.59 50.0 3.45e-01 100.0% 36.4%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3754034 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.89 78.0 6.35e-01 100.0% 54.1%
4530141 192.11.1.1 ↗ alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR 0.87 75.0 7.36e-01 97.9% 92.0%
3942653 632.22.1.118 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › YciZ 0.86 77.0 6.72e-01 100.0% 68.6%
3360337 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.83 64.0 6.77e-01 89.4% 100.0%
5030918 632.11.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 0.83 69.0 5.83e-01 95.7% 57.5%
4965021 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 53.0 5.17e-01 100.0% 89.1%
4286656 140.1.1.11 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.65 50.0 4.04e-01 95.7% 40.0%