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KJ473422.1__AHY26705.1__vB_AbaM_Acibel004_90__00090
Bact-VirKJ473422.1__AHY26705.1__vB_AbaM_Acibel004_90__00090
Identity
- Accession:
- KJ473422 ↗
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Taxonomy
TaxID: 1481186
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-78
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l6gA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.63 | 56.0 | 4.57e-01 | 100.0% | 94.7% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.60 | 46.0 | 4.49e-01 | 92.3% | 76.7% |
| 1b43A02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.58 | 35.0 | 3.85e-01 | 80.8% | 77.0% |
| 1jkwA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.58 | 44.0 | 4.12e-01 | 92.3% | 66.3% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 47.0 | 4.64e-01 | 98.7% | 88.6% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.56 | 41.0 | 3.56e-01 | 76.9% | 57.6% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 42.0 | 4.21e-01 | 91.0% | 79.7% |
| 2clbA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 44.0 | 3.61e-01 | 91.0% | 81.1% |
| 3triA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.55 | 42.0 | 3.82e-01 | 87.2% | 61.2% |
| 2hyjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 44.0 | 3.62e-01 | 96.2% | 47.6% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.54 | 45.0 | 3.23e-01 | 98.7% | 92.1% |
| 2g38B00 | 1.20.1260.20 | Mainly Alpha › Up-down Bundle › Ferritin › PPE superfamily | 0.54 | 39.0 | 3.02e-01 | 75.6% | 85.5% |
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.53 | 45.0 | 3.93e-01 | 96.2% | 86.8% |
| 3m03B00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 39.0 | 3.70e-01 | 88.5% | 67.4% |
| 4jioA01 | 1.20.120.560 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › alix/aip1 in complex with the ypdl late domain | 0.52 | 44.0 | 3.61e-01 | 100.0% | 85.7% |
| 1grlB01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.52 | 44.0 | 3.22e-01 | 100.0% | 33.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032438 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.69 | 61.0 | 5.58e-01 | 97.4% | 99.0% |
| 3642946 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.67 | 57.0 | 5.73e-01 | 94.9% | 98.8% |
| 3862038 | 103.1.1.142 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_Sid-3 | 0.65 | 36.0 | 3.75e-01 | 83.3% | 56.0% |
| 3898675 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 40.0 | 3.78e-01 | 88.5% | 51.6% |
| 3207847 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.63 | 54.0 | 5.33e-01 | 98.7% | 89.4% |
| 3288147 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.62 | 50.0 | 4.69e-01 | 100.0% | 73.0% |
| 3925604 | 109.32.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Alkylsulfatase SdsA1 linker domain › Alkylsulfatase SdsA1 linker domain | 0.61 | 52.0 | 4.67e-01 | 100.0% | 67.8% |
| 3377613 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 49.0 | 4.50e-01 | 94.9% | 68.2% |
| 3774553 | 223.2.1.22 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Folliculin | 0.59 | 52.0 | 3.64e-01 | 100.0% | 75.4% |
| 5030740 | 601.7.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like | 0.58 | 44.0 | 3.57e-01 | 80.8% | 64.8% |
| 5047500 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.57 | 50.0 | 3.72e-01 | 100.0% | 94.8% |
| 4223269 | 101.1.10.50 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF29928 | 0.57 | 49.0 | 4.01e-01 | 100.0% | 80.0% |
| 4606367 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.57 | 37.0 | 3.09e-01 | 84.6% | 34.9% |
| 4979197 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.57 | 45.0 | 3.13e-01 | 88.5% | 70.7% |
| 55455 | 611.2.1.0 ↗ | alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) | 0.57 | 47.0 | 4.03e-01 | 92.3% | 80.0% |
| 3303117 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.57 | 49.0 | 4.83e-01 | 97.4% | 91.8% |
| 3997160 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.56 | 47.0 | 4.39e-01 | 94.9% | 77.0% |
| 5048128 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.55 | 43.0 | 2.97e-01 | 85.9% | 64.1% |
| 3755802 | 604.12.1.98 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › NKAIN | 0.52 | 40.0 | 3.63e-01 | 89.7% | 61.9% |
| 4664272 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.51 | 39.0 | 3.53e-01 | 84.6% | 93.0% |
| 3988026 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.50 | 41.0 | 3.87e-01 | 89.7% | 80.0% |