←Back to structures

KJ473423.1__AHY26773.1__vB_AbaP_Acibel007_2__00002

Bact-Vir

KJ473423.1__AHY26773.1__vB_AbaP_Acibel007_2__00002

Identity

Accession:
KJ473423 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Daemvirus› Acinetobacter_phage_vB_AbaP_Acibel007

TaxID: 1481187

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-71
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 49.0 3.57e-01 77.9% 31.7%
4h5uA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.65 39.0 2.51e-01 77.9% 13.5%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 51.0 3.78e-01 85.3% 41.8%
4uopA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.63 49.0 4.50e-01 86.8% 64.5%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 44.0 3.99e-01 83.8% 59.1%
3tlqA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.58 42.0 2.92e-01 76.5% 40.7%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.56 46.0 4.18e-01 89.7% 68.5%
1t7vA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 43.0 3.19e-01 83.8% 34.3%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.56 36.0 2.45e-01 75.0% 19.5%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.55 42.0 2.81e-01 80.9% 96.9%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 38.0 2.54e-01 72.1% 19.4%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.55 30.0 3.26e-01 70.6% 61.4%
1k8iA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.55 40.0 3.87e-01 77.9% 80.5%
1u04A04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 41.0 2.86e-01 82.4% 91.5%
1pj5A04 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.53 38.0 3.15e-01 75.0% 42.5%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.27e-01 73.5% 98.0%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 37.0 2.33e-01 75.0% 42.5%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 35.0 2.30e-01 70.6% 46.2%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 34.0 3.46e-01 70.6% 92.9%
4gqcA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 35.0 2.73e-01 73.5% 87.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051764 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.88 60.0 4.47e-01 94.1% 31.0%
4139864 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.66 58.0 5.06e-01 95.6% 72.4%
4972215 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.65 57.0 3.93e-01 94.1% 78.1%
3282535 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.62 43.0 2.88e-01 72.1% 96.2%
3415237 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 45.0 3.22e-01 82.4% 29.8%
3258230 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.60 43.0 2.86e-01 76.5% 96.4%
4946325 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 39.0 3.35e-01 79.4% 43.8%
5001814 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.59 43.0 4.02e-01 77.9% 97.6%
4067567 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.59 51.0 4.51e-01 92.6% 66.3%
3283626 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.59 44.0 4.49e-01 77.9% 83.1%
3273629 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.58 44.0 2.84e-01 80.9% 96.7%
5020026 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.57 41.0 3.87e-01 76.5% 97.6%
3236833 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.57 44.0 2.90e-01 83.8% 95.7%
4370161 511.1.1.1 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.56 49.0 3.61e-01 92.6% 68.1%
3251694 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.55 47.0 3.07e-01 94.1% 88.3%
3239772 101.1.1.264 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SPK 0.55 38.0 3.12e-01 72.1% 63.8%
3255612 5.1.4.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.55 44.0 2.85e-01 89.7% 39.1%
3269373 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.71e-01 79.4% 100.0%
4027842 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.54 39.0 2.48e-01 75.0% 53.5%
5071730 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.00e-01 83.8% 33.1%
3242924 101.1.1.264 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SPK 0.54 38.0 3.30e-01 75.0% 71.8%
3220456 101.1.1.264 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SPK 0.53 38.0 3.11e-01 75.0% 63.8%
3513469 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 37.0 2.92e-01 75.0% 90.3%
5002524 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.51 38.0 3.30e-01 82.4% 77.4%