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KJ528544.1__AHZ10887.1__WP2_15__00015

Bact-Vir

KJ528544.1__AHZ10887.1__WP2_15__00015

Identity

Accession:
KJ528544 ↗
Kingdom:
phage

Quality

63.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rountreeviridae› Negarvirus› Lactococcus_phage_WP-2

TaxID: 1486423

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-114_188-199
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21480.4 best PlyCA_N 160.2 6.40e-47 98.1% 50.0%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nvmA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.76 46.0 5.66e-01 81.9% 98.4%
1b25A02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.58 49.0 4.18e-01 95.2% 99.4%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 35.0 4.07e-01 86.7% 97.2%
4hfvA02 6.10.280.170 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Substrate of the Dot/Icm secretion system 0.52 23.0 2.82e-01 70.5% 62.0%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.52 38.0 3.18e-01 77.1% 87.0%
7watB02 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.52 41.0 3.04e-01 88.6% 58.2%
1a52A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 37.0 2.90e-01 75.2% 84.1%
2kvdA02 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.51 26.0 3.17e-01 88.6% 82.8%
1iv8A03 1.10.150.200 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 0.50 32.0 3.52e-01 74.3% 78.8%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185735 235.1.1.26 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PlyCA_N 0.88 84.0 6.53e-01 100.0% 84.5%
2534443 103.12.1.1 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.61 40.0 4.37e-01 79.0% 81.4%
4042821 4230.1.1.0 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain 0.61 44.0 4.43e-01 91.4% 74.3%
3724301 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 44.0 4.53e-01 83.8% 83.0%
3739099 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.55 34.0 3.20e-01 93.3% 50.4%
3636092 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.54 33.0 2.86e-01 92.4% 38.2%
2527708 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.53 36.0 3.32e-01 84.8% 51.7%
3687744 5054.1.1.6 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH 0.52 32.0 2.91e-01 93.3% 43.6%
3952601 103.12.1.1 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.52 34.0 3.93e-01 74.3% 98.6%
5043060 1075.5.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE 0.51 37.0 3.03e-01 77.1% 94.8%
D2 high residues 314-457
PDB
D3 medium residues 8-21_115-187_210-221
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21480.4 best PlyCA_N 107.6 8.70e-31 77.8% 38.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
185735 235.1.1.26 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PlyCA_N 0.83 74.0 5.71e-01 93.9% 98.0%