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KJ528544.1__AHZ10892.1__WP2_20__00020
Bact-VirKJ528544.1__AHZ10892.1__WP2_20__00020
Identity
- Accession:
- KJ528544 ↗
- Kingdom:
- phage
Quality
81.6
mean pLDDT
Taxonomy
TaxID: 1486423
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 64-131
Domain cluster:
rep: NC_027366.1__YP_009151110.1__CPT_Mater151__00151__D368-432
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eqnA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.79 | 67.0 | 4.16e-01 | 92.6% | 35.1% |
| 3jurA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.74 | 67.0 | 4.00e-01 | 98.5% | 39.6% |
| 4mxnB00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.74 | 68.0 | 4.65e-01 | 100.0% | 61.5% |
| 3zppA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.73 | 65.0 | 3.93e-01 | 98.5% | 33.5% |
| 3gq8A01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 65.0 | 3.87e-01 | 98.5% | 26.9% |
| 7chuA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 64.0 | 4.02e-01 | 98.5% | 35.0% |
| 2uvfB02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 64.0 | 3.86e-01 | 98.5% | 42.4% |
| 5olpA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 64.0 | 3.86e-01 | 98.5% | 39.8% |
| 7b7aA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 62.0 | 3.84e-01 | 98.5% | 35.4% |
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.58 | 47.0 | 3.71e-01 | 94.1% | 53.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3368264 | 207.2.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 | 0.75 | 67.0 | 4.00e-01 | 98.5% | 33.0% |
| 3287619 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.74 | 67.0 | 4.03e-01 | 98.5% | 25.4% |
| 3307012 | 207.2.2.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin › Glyco_hydro_28 | 0.74 | 66.0 | 4.95e-01 | 98.5% | 82.5% |
| 4517293 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.74 | 66.0 | 3.96e-01 | 98.5% | 41.8% |
| 1222072 | 207.2.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 | 0.72 | 64.0 | 3.85e-01 | 98.5% | 41.7% |
| 4012052 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.72 | 64.0 | 4.01e-01 | 98.5% | 38.0% |
| 3920456 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 50.0 | 4.28e-01 | 97.1% | 67.8% |
| 3915156 | 1160.1.1.0 ↗ | beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain | 0.59 | 49.0 | 4.03e-01 | 97.1% | 57.8% |
| 3173149 | 1143.1.1.1 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C | 0.55 | 42.0 | 3.98e-01 | 100.0% | 69.4% |
| 3254341 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.54 | 43.0 | 2.96e-01 | 89.7% | 27.5% |
| 3738584 | 1143.1.1.0 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit | 0.54 | 40.0 | 3.89e-01 | 100.0% | 71.2% |
| 377410 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.53 | 45.0 | 2.80e-01 | 100.0% | 25.1% |
D2
medium
residues 329-417
Domain cluster:
rep: KJ528544.1__AHZ10892.1__WP2_20__00020__D418-502
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m9cA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.69 | 63.0 | 5.80e-01 | 100.0% | 88.7% |
| 1hv9B02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.69 | 63.0 | 4.87e-01 | 100.0% | 50.8% |
| 2e85B00 | 3.40.50.1450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like | 0.54 | 40.0 | 3.42e-01 | 82.0% | 96.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938039 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.78 | 63.0 | 5.50e-01 | 100.0% | 58.5% |
| 3250015 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.76 | 63.0 | 6.05e-01 | 100.0% | 79.0% |
| 5080879 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.75 | 64.0 | 5.83e-01 | 100.0% | 70.4% |
| 5061982 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.68 | 63.0 | 5.84e-01 | 100.0% | 85.5% |
| 4424252 | 208.1.1.15 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_GlmU | 0.67 | 61.0 | 5.14e-01 | 100.0% | 75.0% |
| 3716111 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.66 | 60.0 | 4.93e-01 | 100.0% | 76.2% |
| 3705723 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.66 | 60.0 | 4.52e-01 | 100.0% | 49.0% |
| 397628 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.66 | 58.0 | 4.36e-01 | 100.0% | 50.4% |
| 3261694 | 208.1.1.12 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Fucokinase | 0.59 | 52.0 | 3.87e-01 | 96.6% | 77.3% |
D3
medium
residues 418-502
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xqhA01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.85 | 81.0 | 6.72e-01 | 100.0% | 67.4% |
| 3wp8A02 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.82 | 77.0 | 6.19e-01 | 100.0% | 59.2% |
| 3s6lD00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.81 | 77.0 | 6.06e-01 | 100.0% | 55.1% |
| 1p9hA00 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.80 | 76.0 | 5.74e-01 | 100.0% | 48.6% |
| 3sucA02 | 2.160.10.20 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Insect antifreeze protein | 0.79 | 73.0 | 6.18e-01 | 100.0% | 69.4% |
| 1hv9B02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.76 | 69.0 | 5.29e-01 | 100.0% | 56.6% |
| 3d98A02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.76 | 69.0 | 5.64e-01 | 100.0% | 72.4% |
| 7d73E02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.76 | 69.0 | 5.86e-01 | 100.0% | 67.2% |
| 3mqgC01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.75 | 68.0 | 5.58e-01 | 100.0% | 81.0% |
| 2iu8C02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.75 | 68.0 | 5.06e-01 | 100.0% | 64.9% |
| 5jxxA01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.75 | 68.0 | 5.20e-01 | 100.0% | 68.1% |
| 7d73C02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.75 | 68.0 | 5.39e-01 | 100.0% | 79.8% |
| 3r0sA01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.75 | 68.0 | 5.22e-01 | 100.0% | 68.6% |
| 4ea9A02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.75 | 67.0 | 6.15e-01 | 98.8% | 97.3% |
| 4m9cA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.75 | 67.0 | 6.09e-01 | 100.0% | 87.0% |
| 4e79A02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.74 | 67.0 | 4.99e-01 | 100.0% | 64.3% |
| 3f1xA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.73 | 64.0 | 6.18e-01 | 95.3% | 96.8% |
| 2yo0A01 | 2.150.10.10 | Mainly Beta › 2 Solenoid › Alkaline Protease, subunit P, domain 1 › Serralysin-like metalloprotease, C-terminal | 0.71 | 62.0 | 4.97e-01 | 94.1% | 54.1% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185868 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.89 | 75.0 | 6.01e-01 | 100.0% | 50.0% |
| 3965420 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.85 | 75.0 | 6.52e-01 | 100.0% | 64.0% |
| 4101253 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.85 | 80.0 | 6.13e-01 | 100.0% | 52.0% |
| 3965736 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.82 | 78.0 | 5.67e-01 | 100.0% | 49.3% |
| 3984088 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.81 | 78.0 | 5.59e-01 | 100.0% | 41.4% |
| 4593120 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.81 | 77.0 | 5.89e-01 | 100.0% | 50.3% |
| 2880595 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.81 | 77.0 | 4.97e-01 | 100.0% | 26.7% |
| 3965888 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.81 | 77.0 | 5.60e-01 | 100.0% | 43.5% |
| 4883110 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.80 | 75.0 | 5.49e-01 | 100.0% | 41.7% |
| 4225149 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.80 | 77.0 | 5.51e-01 | 100.0% | 41.0% |
| 3984087 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.80 | 75.0 | 5.98e-01 | 100.0% | 56.8% |
| 364253 | 208.2.1.5 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › Peptidase_G2 | 0.80 | 73.0 | 6.11e-01 | 100.0% | 66.4% |
| 4572690 | 208.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › YadA_head | 0.79 | 74.0 | 6.71e-01 | 100.0% | 80.0% |
| 4149052 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.76 | 70.0 | 5.30e-01 | 100.0% | 78.4% |
| 5010157 | 208.1.1.15 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_GlmU | 0.76 | 70.0 | 6.27e-01 | 100.0% | 92.1% |
| 4028622 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.75 | 69.0 | 5.28e-01 | 100.0% | 49.7% |
| 3737403 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.75 | 68.0 | 6.07e-01 | 100.0% | 77.1% |
| 4108042 | 208.1.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 | 0.75 | 68.0 | 5.48e-01 | 100.0% | 73.1% |
| 4401275 | 208.1.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 | 0.75 | 68.0 | 4.82e-01 | 100.0% | 54.4% |
| 4940925 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.75 | 68.0 | 4.88e-01 | 100.0% | 52.1% |
| 4328739 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.75 | 68.0 | 4.78e-01 | 100.0% | 52.9% |
| 3182022 | 208.1.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Mac | 0.75 | 67.0 | 5.05e-01 | 100.0% | 63.5% |
| 5053799 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.74 | 68.0 | 5.27e-01 | 100.0% | 70.0% |
| 4524367 | 208.1.1.6 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_2 | 0.74 | 68.0 | 4.82e-01 | 100.0% | 55.1% |
| 4081575 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.74 | 68.0 | 4.77e-01 | 100.0% | 53.9% |
| 979110 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.74 | 67.0 | 5.26e-01 | 100.0% | 75.1% |
| 5069167 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.74 | 66.0 | 5.23e-01 | 100.0% | 70.9% |
| 5082078 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.74 | 64.0 | 6.34e-01 | 96.5% | 100.0% |
| 4073496 | 208.1.1.15 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep_GlmU | 0.74 | 67.0 | 6.27e-01 | 100.0% | 87.5% |
| 3262883 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.74 | 66.0 | 5.32e-01 | 100.0% | 63.6% |
| 4943469 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.73 | 66.0 | 5.13e-01 | 100.0% | 64.1% |
| 3725826 | 208.1.1.9 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DCTN5 | 0.73 | 67.0 | 5.08e-01 | 100.0% | 66.3% |
| 5061916 | 208.1.1.17 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › GMPPB_C | 0.73 | 64.0 | 5.92e-01 | 95.3% | 91.4% |
| 3491834 | 208.1.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › LbH_EIF2B | 0.72 | 65.0 | 5.99e-01 | 100.0% | 83.3% |
| 4013675 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.72 | 62.0 | 4.83e-01 | 95.3% | 71.9% |
| 3841938 | 208.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain | 0.72 | 65.0 | 4.82e-01 | 100.0% | 41.9% |
| 4154077 | 208.1.1.18 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep+Hexapep_GlmU | 0.70 | 63.0 | 5.97e-01 | 100.0% | 97.0% |
| 3978492 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.67 | 61.0 | 4.27e-01 | 97.6% | 34.0% |
| 4876297 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.66 | 55.0 | 5.43e-01 | 98.8% | 85.4% |
| 4928486 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.66 | 58.0 | 4.38e-01 | 97.6% | 61.9% |
| 3598522 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.65 | 59.0 | 4.02e-01 | 100.0% | 42.7% |
| 3985064 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.64 | 44.0 | 3.82e-01 | 84.7% | 48.0% |
| 3991058 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.60 | 44.0 | 4.78e-01 | 87.1% | 94.3% |
D4
medium
residues 531-584
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.67 | 52.0 | 3.51e-01 | 87.0% | 56.4% |
| 6yiiA01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.59 | 45.0 | 3.10e-01 | 88.9% | 81.6% |
| 2v4jB03 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 42.0 | 3.97e-01 | 75.9% | 70.8% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 33.0 | 2.86e-01 | 90.7% | 34.9% |
| 3wa7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 47.0 | 2.78e-01 | 92.6% | 95.9% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.56 | 43.0 | 3.31e-01 | 90.7% | 67.1% |
| 1qmgB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 43.0 | 3.03e-01 | 96.3% | 86.1% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 39.0 | 3.07e-01 | 100.0% | 35.3% |
| 1knvB00 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.54 | 41.0 | 2.68e-01 | 88.9% | 67.7% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 42.0 | 3.00e-01 | 94.4% | 83.8% |
| 1zcdA00 | 1.20.1530.10 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain | 0.52 | 39.0 | 2.45e-01 | 88.9% | 20.7% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 29.0 | 2.39e-01 | 90.7% | 27.4% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 37.0 | 2.59e-01 | 77.8% | 79.3% |
| 3mweB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 39.0 | 2.97e-01 | 87.0% | 44.2% |
| 5w0kA01 | 3.90.380.20 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II | 0.51 | 34.0 | 2.20e-01 | 72.2% | 79.1% |
| 2uvaG01 | 1.20.1050.120 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 40.0 | 3.18e-01 | 96.3% | 72.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4443892 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.58 | 39.0 | 3.88e-01 | 74.1% | 69.1% |
| 4521030 | 3236.1.1.5 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 | 0.57 | 43.0 | 2.66e-01 | 87.0% | 76.2% |
| 3679040 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.57 | 41.0 | 2.59e-01 | 79.6% | 37.1% |
| 4888882 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.57 | 35.0 | 2.47e-01 | 100.0% | 17.3% |
| 3991465 | 304.28.1.9 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Patched | 0.56 | 42.0 | 2.39e-01 | 90.7% | 64.0% |
| 3549652 | 109.26.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C | 0.56 | 43.0 | 2.41e-01 | 88.9% | 14.7% |
| 4875850 | 4967.1.1.14 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb | 0.55 | 42.0 | 3.84e-01 | 87.0% | 91.0% |
| 5073431 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.55 | 44.0 | 2.60e-01 | 94.4% | 44.4% |
| 4076804 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.55 | 37.0 | 3.77e-01 | 74.1% | 69.1% |
| 3684015 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.55 | 37.0 | 3.06e-01 | 70.4% | 85.0% |
| 5064574 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.54 | 37.0 | 3.60e-01 | 74.1% | 63.3% |
| 149562 | 2008.1.1.26 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Bse634I | 0.54 | 40.0 | 2.66e-01 | 87.0% | 67.9% |
| 3718634 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.54 | 39.0 | 2.68e-01 | 85.2% | 63.7% |
| 3373297 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.54 | 42.0 | 2.52e-01 | 92.6% | 18.5% |
| 3176170 | 109.4.1.1369 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3, MIF4G | 0.52 | 42.0 | 2.43e-01 | 94.4% | 29.8% |
| 3326674 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.52 | 32.0 | 3.26e-01 | 70.4% | 58.2% |
| 5052204 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.52 | 37.0 | 3.38e-01 | 83.3% | 64.7% |
| 3460270 | 603.1.1.143 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF547 | 0.52 | 36.0 | 2.51e-01 | 75.9% | 71.7% |
| 3578350 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.51 | 38.0 | 2.34e-01 | 100.0% | 12.2% |
| 4679101 | 313.1.1.0 ↗ | a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain | 0.51 | 38.0 | 2.41e-01 | 85.2% | 25.2% |
| 3941747 | 101.1.9.78 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA | 0.51 | 41.0 | 3.37e-01 | 94.4% | 75.5% |
| 3223614 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.50 | 36.0 | 2.47e-01 | 85.2% | 56.4% |
| 3723552 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.50 | 42.0 | 2.54e-01 | 100.0% | 28.9% |
| 5028075 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.50 | 31.0 | 3.22e-01 | 100.0% | 64.0% |
| 3272367 | 2004.5.1.3 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN | 0.50 | 34.0 | 2.37e-01 | 74.1% | 20.0% |