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KJ534580.1__AHX01087.1__M316_0022__00022

Bact-Vir

KJ534580.1__AHX01087.1__M316_0022__00022

Identity

Accession:
KJ534580 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitrincola_phage_1M3-16

TaxID: 1472912

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 233-366
PDB
D2 medium residues 1-57
PDB
Domain cluster: rep: PH2015_20_scaffold_1_prodigal-single.1__X__X__00198__D1-65
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ecfA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.62 45.0 2.69e-01 94.7% 10.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.58 41.0 3.56e-01 86.0% 47.8%
3ktbA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 39.0 3.18e-01 71.9% 81.1%
2pptA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 43.0 3.55e-01 84.2% 84.0%
2rh0A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 32.0 3.14e-01 80.7% 46.9%
3qdnA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 43.0 3.44e-01 84.2% 80.5%
1w4vA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 42.0 3.43e-01 84.2% 83.6%
1zu0A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 40.0 2.90e-01 80.7% 64.8%
3tcoA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 41.0 3.41e-01 84.2% 84.0%
3ufiA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.53 39.0 2.96e-01 80.7% 62.1%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 40.0 2.84e-01 86.0% 97.4%
2qyuA03 3.40.1850.10 Alpha Beta › 3-Layer(aba) Sandwich › HECT-like ubiquitin ligase fold › HECT-like ubiquitin ligase 0.51 37.0 3.38e-01 77.2% 61.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4985895 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.59 43.0 4.12e-01 80.7% 67.1%
3389887 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.59 44.0 3.89e-01 94.7% 54.1%
3593150 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.58 47.0 3.13e-01 93.0% 54.9%
3621272 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.56 45.0 3.43e-01 94.7% 37.8%
3342057 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.55 42.0 3.41e-01 84.2% 78.3%
5019662 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 40.0 3.11e-01 86.0% 45.8%
4973069 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.54 35.0 3.72e-01 80.7% 76.0%
3450393 5.1.4.586 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Str_synth 0.53 44.0 2.94e-01 96.5% 54.4%
999476 11.1.4.22 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Mfa_like_1 0.53 39.0 2.98e-01 80.7% 63.3%
3616598 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.53 45.0 3.79e-01 94.7% 58.9%
D3 medium residues 58-229
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qwuA02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.70 66.0 6.50e-01 99.4% 95.6%
3kyhC01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.62 58.0 5.13e-01 100.0% 83.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3594981 206.1.3.23 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase 0.78 73.0 6.01e-01 100.0% 82.7%
1698226 206.1.3.23 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase 0.75 71.0 6.66e-01 100.0% 87.3%
3709083 206.1.3.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF7920 0.75 71.0 5.50e-01 100.0% 61.4%
3270508 206.1.3.23 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase 0.74 70.0 6.31e-01 100.0% 83.4%
5017089 206.1.3.23 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase 0.72 68.0 6.00e-01 100.0% 72.5%
7118 206.1.3.4 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.60 56.0 5.09e-01 100.0% 76.3%
3414064 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.57 17.0 2.80e-01 89.0% 70.9%