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KJ534580.1__AHX01155.1__M316_0090__00090

Bact-Vir

KJ534580.1__AHX01155.1__M316_0090__00090

Identity

Accession:
KJ534580 ↗
Kingdom:
phage

Quality

79.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitrincola_phage_1M3-16

TaxID: 1472912

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-169
PDB
Domain cluster: rep: HQ332139.1__AGF91556.1__PRRG_00047__00045__D4-148
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l55A00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.75 35.0 4.96e-01 94.6% 91.5%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 27.0 3.08e-01 99.4% 45.5%
1je5A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 61.0 5.95e-01 96.4% 93.4%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 27.0 3.01e-01 100.0% 46.6%
1wydA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 38.0 4.78e-01 100.0% 93.1%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.64 31.0 4.17e-01 99.4% 88.1%
4jg2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 60.0 5.78e-01 98.8% 89.2%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 35.0 4.10e-01 100.0% 75.4%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.57 20.0 3.07e-01 84.3% 76.2%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 36.0 3.82e-01 100.0% 70.4%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 36.0 3.91e-01 100.0% 75.2%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 36.0 3.94e-01 100.0% 76.4%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 37.0 4.06e-01 100.0% 80.7%
6nrzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.98e-01 100.0% 74.8%
2w1nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 21.0 2.89e-01 94.6% 74.4%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
379 2.1.1.108 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SBB_T7 0.67 61.0 5.95e-01 96.4% 93.4%
1094888 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 38.0 4.71e-01 100.0% 90.7%
5051423 2.1.1.67 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.64 33.0 4.07e-01 100.0% 77.1%
3704585 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 35.0 4.19e-01 100.0% 76.5%
4976501 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 32.0 4.44e-01 100.0% 95.3%
4927707 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.63 29.0 3.13e-01 100.0% 49.3%
3625309 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 35.0 3.99e-01 98.8% 70.8%
4630654 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 30.0 4.28e-01 95.2% 100.0%
168817 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 35.0 4.50e-01 100.0% 93.9%
4497198 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.61 36.0 3.75e-01 100.0% 62.6%
4064995 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 36.0 4.03e-01 100.0% 74.1%
5082075 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 34.0 4.39e-01 99.4% 94.0%
4458323 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.60 35.0 3.93e-01 100.0% 72.6%
3593282 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 34.0 4.41e-01 97.6% 100.0%
4374423 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 36.0 4.00e-01 100.0% 75.6%
4454256 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 36.0 3.90e-01 100.0% 70.3%
4417682 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 36.0 3.98e-01 100.0% 75.6%
4507728 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.58 36.0 3.89e-01 100.0% 72.9%
3614693 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 37.0 4.07e-01 100.0% 79.3%
5076505 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 36.0 3.90e-01 100.0% 74.3%
4580915 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 36.0 3.88e-01 100.0% 73.1%
1447954 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 36.0 3.98e-01 100.0% 77.5%
4144903 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 36.0 3.92e-01 100.0% 75.7%
3707992 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 36.0 3.88e-01 100.0% 73.8%
3596924 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 36.0 3.96e-01 100.0% 77.1%
4084867 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 35.0 3.79e-01 100.0% 72.4%
4425994 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 39.0 3.89e-01 100.0% 69.4%
3274501 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 4.06e-01 100.0% 76.8%
3239000 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 36.0 4.03e-01 97.6% 83.1%
3781120 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 36.0 3.72e-01 100.0% 72.3%
3716842 243.1.1.86 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2_MEX67 0.53 28.0 2.77e-01 100.0% 48.2%
3186929 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 36.0 3.75e-01 100.0% 74.4%
3739908 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 36.0 3.56e-01 100.0% 67.4%
4942186 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 27.0 3.49e-01 98.8% 92.2%