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KJ534580.1__AHX01190.1__M316_0125__00125

Bact-Vir

KJ534580.1__AHX01190.1__M316_0125__00125

Identity

Accession:
KJ534580 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitrincola_phage_1M3-16

TaxID: 1472912

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-109
PDB
Domain cluster: rep: OM654374.1__UNY40132.1__KLEA5_gp13__00013__D12-107
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kluA01 3.30.2220.30 Alpha Beta › 2-Layer Sandwich › rbstp2171 › 0.75 70.0 6.50e-01 100.0% 93.6%
2ob9A00 3.30.2220.20 Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like 0.74 68.0 6.41e-01 100.0% 88.8%
3fgxA00 3.30.2220.10 Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 0.63 50.0 4.98e-01 98.9% 82.3%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.60 34.0 3.25e-01 100.0% 44.2%
2zg6A02 1.10.150.660 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.52 33.0 3.64e-01 97.8% 81.9%
3c18A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 36.0 3.40e-01 74.7% 83.5%
1ckmA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 41.0 3.52e-01 90.1% 69.0%
8cjhA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 41.0 2.75e-01 92.3% 84.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077628 3103.1.1.0 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN 0.67 57.0 5.86e-01 90.1% 100.0%
3944499 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.63 52.0 5.36e-01 100.0% 97.6%
3786329 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.61 30.0 3.74e-01 86.8% 76.4%
3941210 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.54 37.0 3.66e-01 100.0% 67.4%
3378706 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 27.0 2.86e-01 82.4% 51.2%
3926138 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.53 34.0 3.43e-01 100.0% 64.4%
7118 206.1.3.4 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.52 40.0 3.08e-01 84.6% 88.2%
3066252 4032.1.1.1 ↗ beta complex topology › barrel domains in phase 1 flagellin › barrel domains in phase 1 flagellin › barrel domains in phase 1 flagellin › Flagellin_IN 0.52 27.0 2.60e-01 92.3% 41.2%
3927687 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.51 40.0 3.95e-01 100.0% 80.0%
4028481 811.1.1.1 ↗ a+b complex topology › Cell cycle regulatory proteins › Cell cycle regulatory proteins › Cell cycle regulatory proteins › CKS 0.51 36.0 3.63e-01 98.9% 74.4%
3738296 2498.1.1.155 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PF30956 0.51 41.0 2.86e-01 92.3% 76.9%
3359636 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.50 39.0 2.85e-01 83.5% 89.6%