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KJ534580.1__AHX01204.1__M316_0139__00139

Bact-Vir

KJ534580.1__AHX01204.1__M316_0139__00139

Identity

Accession:
KJ534580 ↗
Kingdom:
phage

Quality

92.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitrincola_phage_1M3-16

TaxID: 1472912

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: rep: MN695334.1__QGT54418.1__b3_0174__00160__D2-64
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.93e-01 100.0% 88.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.86e-01 100.0% 90.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 44.0 3.99e-01 96.8% 51.8%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.63 38.0 3.74e-01 92.1% 54.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.61e-01 100.0% 70.1%
7w6zA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 50.0 4.53e-01 100.0% 92.6%
4flnA02 3.20.190.20 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › 0.59 48.0 3.81e-01 96.8% 54.6%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 35.0 2.92e-01 98.4% 32.5%
2xbkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 45.0 2.87e-01 92.1% 76.0%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.57 40.0 4.20e-01 85.7% 82.5%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.20e-01 100.0% 73.2%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 42.0 4.34e-01 100.0% 88.1%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 34.0 3.56e-01 87.3% 69.0%
1cmjA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 41.0 2.62e-01 90.5% 75.9%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 3.18e-01 95.2% 53.8%
3psqB00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.52 44.0 3.27e-01 100.0% 74.7%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 2.92e-01 95.2% 39.3%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 33.0 3.01e-01 96.8% 48.3%
1z7uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 2.92e-01 95.2% 40.9%
4griA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.51 36.0 3.03e-01 79.4% 83.7%
3kkjA02 3.90.660.10 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › 0.50 43.0 3.22e-01 100.0% 50.3%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 32.0 2.98e-01 95.2% 50.0%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 40.0 3.62e-01 96.8% 65.1%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.70e-01 100.0% 87.3%
4139090 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.71 51.0 5.38e-01 100.0% 85.5%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.71 51.0 5.13e-01 100.0% 73.8%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.70 50.0 5.28e-01 100.0% 85.5%
4981300 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.70 47.0 4.69e-01 100.0% 67.7%
5076401 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 47.0 4.56e-01 100.0% 62.9%
4937586 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 44.0 4.45e-01 96.8% 64.6%
3977126 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.68 51.0 5.36e-01 100.0% 90.9%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 51.0 4.92e-01 100.0% 71.4%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 50.0 4.85e-01 100.0% 70.0%
4979962 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 45.0 4.47e-01 100.0% 67.7%
5050320 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 49.0 4.64e-01 100.0% 66.7%
5058270 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 44.0 4.55e-01 100.0% 73.3%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 45.0 4.36e-01 100.0% 64.3%
4959192 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 46.0 4.56e-01 100.0% 70.8%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 49.0 4.85e-01 100.0% 76.9%
3263031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.65e-01 100.0% 73.8%
4226849 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 49.0 4.54e-01 100.0% 63.7%
4932588 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 45.0 4.51e-01 100.0% 70.8%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 49.0 4.72e-01 100.0% 72.9%
5029186 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 44.0 4.42e-01 100.0% 70.8%
5028692 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 43.0 4.30e-01 100.0% 69.2%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 50.0 4.73e-01 100.0% 72.0%
3970459 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 43.0 4.28e-01 98.4% 70.3%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 45.0 4.00e-01 77.8% 55.6%
3834747 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 42.0 4.14e-01 100.0% 65.7%
5028058 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 36.0 2.91e-01 96.8% 30.8%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.60 45.0 4.65e-01 100.0% 86.7%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 45.0 4.61e-01 100.0% 86.7%
5025204 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 52.0 4.60e-01 100.0% 75.6%
5042330 4203.1.1.0 ↗ few secondary structure elements › HSP33 redox switch-like › HSP33 redox switch-like › HSP33 redox switch-like 0.57 46.0 4.47e-01 92.1% 87.1%
3924514 109.4.1.83 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.57 36.0 2.35e-01 77.8% 14.1%
4026633 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.57 45.0 3.15e-01 90.5% 77.8%
4025072 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.56 39.0 3.31e-01 74.6% 41.7%
3771989 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.56 40.0 3.20e-01 77.8% 37.0%
3723153 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.55 39.0 2.40e-01 76.2% 67.4%
3788897 309.1.1.2 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C 0.54 46.0 2.56e-01 100.0% 17.0%
4933205 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 48.0 4.28e-01 100.0% 75.6%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.54 42.0 4.20e-01 100.0% 84.6%
3571636 206.1.3.35 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF5565 0.53 40.0 2.77e-01 84.1% 83.2%
3976933 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 36.0 2.90e-01 73.0% 60.7%
3253892 2004.1.1.409 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 0.52 39.0 2.96e-01 88.9% 98.5%
4974545 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 34.0 2.85e-01 96.8% 38.2%
3630462 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 43.0 3.32e-01 95.2% 91.4%
5006536 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.50 33.0 2.97e-01 93.7% 46.7%