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KJ564038.1__AIF54465.1__LDB3_040__00040

Bact-Vir

KJ564038.1__AIF54465.1__LDB3_040__00040

Identity

Accession:
KJ564038 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Cequinquevirus› Lactobacillus_phage_Ld3

TaxID: 1500735

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
Domain cluster: rep: ON117106.1__UPI30808.1__DEDGFLLK_00060__00060__D3-73
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 56.0 4.34e-01 100.0% 53.3%
3fruA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 56.0 4.33e-01 100.0% 48.6%
2i8dA01 3.90.1150.200 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.64 42.0 4.20e-01 73.7% 64.2%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 55.0 4.27e-01 100.0% 50.3%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 55.0 4.29e-01 100.0% 52.0%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 54.0 4.27e-01 100.0% 55.5%
4iiqC02 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 54.0 4.17e-01 97.4% 51.7%
1fneA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.62 46.0 4.57e-01 78.9% 79.7%
1k8iB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.62 45.0 4.26e-01 77.6% 83.5%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 53.0 4.21e-01 100.0% 52.4%
1zt4C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 54.0 4.14e-01 100.0% 51.4%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 53.0 4.13e-01 100.0% 52.6%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 52.0 4.09e-01 100.0% 87.1%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 52.0 4.04e-01 100.0% 57.2%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 52.0 4.02e-01 100.0% 87.8%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.60 44.0 4.24e-01 78.9% 78.7%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 43.0 3.53e-01 77.6% 43.3%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.41e-01 92.1% 97.2%
1k8iA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.59 44.0 4.43e-01 80.3% 83.1%
4bv4R00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.58 48.0 3.01e-01 96.1% 16.1%
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.58 50.0 4.62e-01 100.0% 82.4%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.56 40.0 4.26e-01 73.7% 90.8%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.48e-01 97.4% 100.0%
2uwaA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.19e-01 97.4% 65.0%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.54 45.0 3.67e-01 97.4% 54.4%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.93e-01 93.4% 92.7%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.83e-01 96.1% 100.0%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 3.15e-01 82.9% 42.9%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 42.0 3.89e-01 90.8% 82.8%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 38.0 3.20e-01 77.6% 51.1%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 43.0 3.49e-01 97.4% 95.1%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.52 42.0 3.31e-01 94.7% 79.6%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.50 42.0 3.63e-01 98.7% 94.0%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.50 38.0 3.62e-01 84.2% 71.6%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.50 38.0 3.49e-01 82.9% 87.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4934918 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.70 50.0 5.17e-01 89.5% 81.4%
142797 233.1.1.6 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.66 48.0 3.73e-01 78.9% 39.9%
4947031 2004.1.1.1065 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › YGR210-like_G4 0.65 46.0 3.00e-01 100.0% 17.5%
3280585 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.65 46.0 4.07e-01 73.7% 86.4%
169555 233.1.1.6 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.65 56.0 4.34e-01 100.0% 53.0%
4836497 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.63 55.0 4.24e-01 98.7% 53.1%
138051 233.1.1.6 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.63 55.0 4.29e-01 100.0% 51.7%
5035266 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.63 54.0 5.30e-01 94.7% 90.4%
3880503 233.1.1.2 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta 0.63 47.0 4.36e-01 78.9% 74.7%
3521727 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.63 54.0 4.20e-01 100.0% 48.6%
3287429 241.11.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.63 44.0 3.98e-01 73.7% 88.6%
3912902 233.1.1.3 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.63 47.0 4.60e-01 80.3% 74.1%
3852409 233.1.1.2 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta 0.62 51.0 4.58e-01 92.1% 84.5%
3550081 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.62 54.0 4.09e-01 100.0% 46.3%
3859354 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.62 53.0 4.10e-01 98.7% 51.1%
1447939 11.36.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Csd4 Ig-like domain › Csd4 Ig-like domain › Peptidase_M99_m 0.61 37.0 3.76e-01 94.7% 60.8%
3907478 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.61 52.0 4.03e-01 98.7% 83.9%
3895829 233.1.1.3 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.61 46.0 4.27e-01 80.3% 66.3%
4965842 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.61 49.0 3.39e-01 89.5% 38.9%
4987739 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.60 48.0 3.45e-01 88.2% 43.0%
2528050 233.1.1.2 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta 0.60 44.0 4.33e-01 78.9% 84.3%
3906288 233.1.1.3 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.60 45.0 4.45e-01 80.3% 87.5%
4950471 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.59 41.0 4.45e-01 71.1% 100.0%
3536727 9.15.1.0 ↗ beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 0.59 49.0 3.84e-01 90.8% 72.5%
4879078 233.1.1.6 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.59 51.0 3.94e-01 100.0% 51.4%
4936682 243.6.1.8 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA 0.58 42.0 4.03e-01 73.7% 82.4%
5057575 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.58 48.0 3.30e-01 92.1% 37.6%
5041419 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.58 43.0 4.23e-01 78.9% 85.0%
5053366 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.57 46.0 3.03e-01 88.2% 31.4%
4987737 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.57 47.0 3.16e-01 92.1% 33.8%
3884395 233.1.1.3 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.56 42.0 4.03e-01 80.3% 70.0%
6441 243.6.1.8 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA 0.56 40.0 4.24e-01 73.7% 89.4%
5034935 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.56 40.0 4.21e-01 76.3% 98.6%
5025174 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.55 39.0 4.09e-01 75.0% 91.4%
5005203 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.55 40.0 3.99e-01 77.6% 86.3%
3963365 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.55 44.0 3.04e-01 88.2% 37.4%
3480422 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 48.0 4.02e-01 98.7% 94.1%
5033945 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.55 39.0 4.04e-01 73.7% 97.1%
5058991 243.6.1.1 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.54 37.0 3.90e-01 72.4% 97.1%
3946113 241.7.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.54 41.0 3.71e-01 82.9% 88.6%
1811384 73.1.1.7 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FtsK_SpoIIIE_N 0.53 45.0 4.40e-01 100.0% 98.8%
4954638 241.9.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.53 44.0 3.92e-01 94.7% 71.1%
4487949 220.1.1.69 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.52 44.0 3.85e-01 96.1% 95.8%
5073839 2008.5.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Uncharacterized protein AF_2093 C-terminal domain › Uncharacterized protein AF_2093 C-terminal domain › DUF6834_C 0.52 41.0 3.47e-01 86.8% 69.6%
3964807 9.7.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › PF28291 0.52 42.0 3.97e-01 90.8% 100.0%
4974156 241.11.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.52 40.0 3.73e-01 86.8% 91.0%
3839444 241.9.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.52 43.0 3.76e-01 94.7% 70.0%
1780243 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.51 43.0 2.98e-01 90.8% 78.2%
3598760 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.51 41.0 3.24e-01 92.1% 65.2%
3237798 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.51 43.0 3.66e-01 100.0% 87.9%
5065809 3518.1.1.1 ↗ a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.50 43.0 3.48e-01 100.0% 60.0%
2631766 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.50 38.0 3.25e-01 93.4% 47.6%
4390281 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.50 39.0 3.44e-01 96.1% 55.0%
3628886 63.1.1.8 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH, PRKCSH_1 0.50 40.0 3.11e-01 89.5% 57.1%