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KJ567043.1__AID58989.1__PBI_GAIA_173__00169
Bact-VirKJ567043.1__AID58989.1__PBI_GAIA_173__00169
Identity
- Accession:
- KJ567043 ↗
- Kingdom:
- phage
Quality
67.9
mean pLDDT
Taxonomy
TaxID: 1486472
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-71
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.74 | 59.0 | 5.48e-01 | 86.6% | 100.0% |
| 3m4aA03 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.67 | 47.0 | 3.93e-01 | 73.1% | 98.3% |
| 1whvA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.66 | 49.0 | 4.31e-01 | 79.1% | 82.0% |
| 3jtnB00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 45.0 | 4.17e-01 | 73.1% | 100.0% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.66 | 50.0 | 3.79e-01 | 83.6% | 41.3% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.60 | 45.0 | 4.14e-01 | 83.6% | 74.5% |
| 6tdxG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.60 | 43.0 | 3.05e-01 | 76.1% | 88.8% |
| 4zg5A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.59 | 47.0 | 3.26e-01 | 89.6% | 97.6% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.58 | 46.0 | 4.77e-01 | 94.0% | 96.7% |
| 3l2pA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.57 | 41.0 | 4.05e-01 | 77.6% | 73.2% |
| 2nscA01 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.57 | 31.0 | 3.03e-01 | 80.6% | 44.9% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.54 | 39.0 | 3.12e-01 | 85.1% | 35.8% |
| 3weeB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 40.0 | 3.10e-01 | 85.1% | 71.3% |
| 3holA04 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 34.0 | 2.76e-01 | 70.1% | 83.4% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3581912 | 304.60.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like | 0.79 | 63.0 | 4.52e-01 | 86.6% | 55.8% |
| 2905139 | 4187.1.1.2 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL | 0.74 | 50.0 | 5.37e-01 | 70.1% | 98.3% |
| 3192994 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.71 | 51.0 | 3.26e-01 | 74.6% | 83.5% |
| 3628891 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.61 | 45.0 | 3.74e-01 | 79.1% | 54.4% |
| 3637401 | 4081.1.1.8 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT_2 | 0.61 | 42.0 | 2.96e-01 | 71.6% | 24.1% |
| 3333626 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.60 | 45.0 | 4.71e-01 | 85.1% | 93.3% |
| 3205036 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.60 | 42.0 | 2.85e-01 | 71.6% | 21.6% |
| 3495764 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.58 | 40.0 | 2.98e-01 | 71.6% | 28.1% |
| 3787008 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.57 | 44.0 | 4.51e-01 | 88.1% | 89.1% |
| 3252861 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.57 | 40.0 | 2.88e-01 | 73.1% | 23.7% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.57 | 39.0 | 2.76e-01 | 71.6% | 23.6% |
| 3308182 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.57 | 46.0 | 4.29e-01 | 94.0% | 70.0% |
| 3267853 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.57 | 38.0 | 2.71e-01 | 70.1% | 22.3% |
| 3826676 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.56 | 43.0 | 2.77e-01 | 85.1% | 55.1% |
| 3579929 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.53 | 46.0 | 3.30e-01 | 100.0% | 91.6% |
| 3991455 | 822.2.1.1 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK | 0.53 | 32.0 | 3.44e-01 | 73.1% | 72.7% |
| 3907235 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.52 | 38.0 | 2.71e-01 | 79.1% | 46.2% |
D2
high
residues 80-121
Domain cluster:
rep: MK016501.1__AYR00097.1__PBI_NEBKISS_168__00165__D193-234
D3
high
residues 125-215