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KJ591605.1__AID17516.1__X__00062

Bact-Vir

KJ591605.1__AID17516.1__X__00062

Identity

Accession:
KJ591605 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Pecentumvirus› Listeria_phage_LMTA-57

TaxID: 1486414

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-100
PDB
Domain cluster: rep: OQ129426.1__WFG33958.1__F10086_36__00036__D184-294
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 53.0 5.65e-01 87.0% 81.6%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.77 51.0 5.49e-01 91.0% 79.1%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 55.0 5.39e-01 88.0% 68.8%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.71 57.0 5.67e-01 87.0% 81.7%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.70 53.0 4.78e-01 88.0% 59.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.69 60.0 5.43e-01 98.0% 69.6%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 51.0 5.14e-01 91.0% 77.0%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 49.0 5.08e-01 87.0% 78.9%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 41.0 4.84e-01 98.0% 90.9%
1pfjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 48.0 4.67e-01 91.0% 67.6%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 38.0 4.61e-01 98.0% 95.0%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 51.0 4.74e-01 91.0% 66.9%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 51.0 5.10e-01 91.0% 82.5%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 5.01e-01 91.0% 79.1%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.61 35.0 3.60e-01 70.0% 58.5%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.61 44.0 4.30e-01 88.0% 69.8%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 53.0 4.57e-01 94.0% 74.3%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 4.63e-01 87.0% 76.2%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 50.0 4.53e-01 91.0% 84.2%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.59 46.0 3.85e-01 85.0% 92.7%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 47.0 4.18e-01 87.0% 95.8%
1droA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 4.55e-01 92.0% 77.0%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 4.29e-01 100.0% 72.8%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.57 32.0 3.89e-01 86.0% 91.5%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 4.40e-01 91.0% 80.5%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.55 40.0 4.40e-01 97.0% 92.8%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.98e-01 87.0% 97.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.55e-01 93.0% 76.2%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 40.0 3.82e-01 89.0% 68.6%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 43.0 3.19e-01 91.0% 34.4%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 44.0 3.66e-01 89.0% 78.8%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 39.0 3.94e-01 79.0% 85.3%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 39.0 2.87e-01 80.0% 89.6%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.50 37.0 3.95e-01 79.0% 89.8%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.50 34.0 2.41e-01 71.0% 94.2%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 42.0 3.79e-01 89.0% 69.7%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3591463 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.81 56.0 5.37e-01 88.0% 62.6%
3699518 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.80 56.0 5.18e-01 88.0% 57.6%
3273863 220.1.1.44 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.79 56.0 5.69e-01 91.0% 74.0%
3845542 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.77 59.0 5.99e-01 81.0% 85.0%
3469923 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 51.0 5.31e-01 88.0% 72.6%
3263647 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 53.0 5.00e-01 88.0% 60.0%
3743938 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 58.0 5.28e-01 88.0% 61.5%
3742330 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.76 54.0 5.18e-01 88.0% 64.3%
3570692 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.75 55.0 5.26e-01 88.0% 66.1%
3259097 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.75 54.0 4.98e-01 89.0% 59.2%
3767975 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.75 58.0 5.64e-01 81.0% 73.6%
3627615 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.75 55.0 4.84e-01 91.0% 53.1%
2712015 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.75 50.0 5.54e-01 91.0% 85.2%
3574847 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.75 55.0 4.84e-01 90.0% 53.1%
3801512 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 55.0 5.17e-01 91.0% 64.2%
3253063 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.74 54.0 5.14e-01 88.0% 65.2%
3750640 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.74 58.0 5.60e-01 89.0% 74.5%
3249490 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 54.0 5.13e-01 91.0% 66.1%
4949986 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.73 59.0 5.78e-01 87.0% 78.2%
3890418 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.73 59.0 5.86e-01 91.0% 81.9%
3531579 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.73 52.0 4.43e-01 88.0% 47.7%
3171728 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 60.0 5.23e-01 88.0% 65.5%
989 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.72 51.0 5.03e-01 91.0% 67.6%
3411942 220.1.1.58 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.72 54.0 4.94e-01 89.0% 60.0%
3899369 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 51.0 4.45e-01 88.0% 49.3%
3931704 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.72 55.0 5.39e-01 91.0% 73.6%
3785371 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.72 60.0 5.34e-01 89.0% 65.2%
4999602 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 52.0 5.39e-01 91.0% 80.0%
4943079 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 55.0 4.65e-01 88.0% 51.6%
3227023 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 58.0 4.68e-01 91.0% 47.6%
4988664 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 49.0 5.55e-01 91.0% 97.3%
5022727 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 50.0 4.27e-01 88.0% 48.7%
3252821 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 54.0 5.24e-01 91.0% 73.6%
3167811 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.70 56.0 5.00e-01 88.0% 62.2%
3916003 220.1.1.61 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.70 51.0 4.87e-01 88.0% 66.1%
5035527 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.70 56.0 5.46e-01 98.0% 78.2%
3223154 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.69 57.0 5.07e-01 88.0% 64.3%
5065350 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 57.0 5.33e-01 88.0% 83.3%
3472026 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.68 54.0 5.08e-01 90.0% 69.2%
4948685 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.68 55.0 5.34e-01 98.0% 77.0%
3908519 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 51.0 4.77e-01 91.0% 64.0%
5055513 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.68 55.0 5.17e-01 98.0% 72.5%
3570527 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 52.0 4.75e-01 88.0% 62.3%
3756865 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.67 47.0 4.21e-01 91.0% 52.1%
3607882 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 52.0 5.05e-01 91.0% 74.5%
4497415 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.66 54.0 5.06e-01 97.0% 70.4%
5000207 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.66 54.0 5.04e-01 98.0% 70.4%
3312151 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 55.0 4.72e-01 89.0% 62.6%
5081087 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 56.0 5.44e-01 91.0% 82.7%
3791314 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.66 52.0 4.73e-01 88.0% 63.0%
3743110 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.66 52.0 5.17e-01 91.0% 80.0%
3245139 220.1.1.28 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › hSac2 0.65 48.0 4.15e-01 88.0% 50.3%
3191989 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.65 54.0 4.73e-01 89.0% 63.4%
3631248 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.64 53.0 4.93e-01 88.0% 72.0%
3278616 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 44.0 4.12e-01 91.0% 56.8%
4158830 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.64 52.0 4.73e-01 87.0% 71.5%
3626366 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 4.67e-01 88.0% 72.7%
185264 222.1.1.19 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlgA_HD-like 0.63 40.0 4.69e-01 96.0% 92.8%
3938368 220.1.1.156 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF30805 0.63 50.0 4.81e-01 90.0% 73.9%
3563547 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.63 54.0 4.96e-01 91.0% 75.2%
4539117 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.63 51.0 4.43e-01 87.0% 58.7%
4344687 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.63 51.0 5.03e-01 87.0% 84.8%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 51.0 4.90e-01 88.0% 77.4%
3269549 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 48.0 4.20e-01 89.0% 54.2%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 46.0 4.45e-01 90.0% 71.3%
3992152 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.60 53.0 4.57e-01 94.0% 72.0%
3226349 220.1.1.5 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.60 52.0 4.49e-01 94.0% 70.3%
3237220 220.1.1.84 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_15 0.59 48.0 4.63e-01 88.0% 77.4%
3395520 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.55 31.0 3.91e-01 83.0% 95.0%
3707456 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 45.0 3.88e-01 89.0% 76.8%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 33.0 3.83e-01 96.0% 100.0%
3473808 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.53 38.0 2.54e-01 92.0% 19.2%
3593387 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 44.0 3.96e-01 89.0% 67.2%
3519861 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 32.0 3.74e-01 98.0% 100.0%
2034120 5.1.3.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.50 40.0 2.74e-01 83.0% 96.9%
3774002 5.1.4.267 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF28639 0.50 41.0 2.52e-01 86.0% 86.0%