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KJ608188.1__AIS73955.1__X__00018

Bact-Vir

KJ608188.1__AIS73955.1__X__00018

Identity

Accession:
KJ608188 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Enterococcus_phage_EFC-1

TaxID: 1486428

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-105
PDB
Domain cluster: rep: OL505084.1__UIE13765.1__X__00060__D15-63
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 68.0 6.17e-01 100.0% 73.5%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.72 61.0 5.99e-01 100.0% 98.2%
3prbA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.71 61.0 4.91e-01 100.0% 94.3%
1hnfA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 45.0 3.89e-01 100.0% 44.3%
4madA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 45.0 3.25e-01 100.0% 29.1%
4esnA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.62 52.0 4.66e-01 100.0% 94.9%
3cmgA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 3.79e-01 100.0% 47.1%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 46.0 3.43e-01 100.0% 33.6%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 44.0 3.46e-01 100.0% 36.9%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.61e-01 100.0% 47.4%
4e8dA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 44.0 3.17e-01 100.0% 29.0%
3cvzB01 3.30.1490.290 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 0.60 53.0 4.26e-01 100.0% 54.5%
3d3aA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 42.0 3.09e-01 100.0% 29.1%
5e16A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 40.0 3.03e-01 100.0% 28.3%
5f7uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 3.61e-01 100.0% 41.4%
5uj6A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 44.0 3.06e-01 100.0% 27.6%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.58e-01 100.0% 46.2%
3kjxD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 48.0 4.51e-01 98.0% 78.7%
3ec8A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 41.0 3.15e-01 86.3% 65.5%
1z0sA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.54 49.0 3.61e-01 100.0% 59.2%
5tipA01 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.54 46.0 3.17e-01 100.0% 45.2%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 3.61e-01 100.0% 49.1%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.43e-01 100.0% 50.6%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.52 41.0 4.26e-01 86.3% 97.8%
1pk6C00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.03e-01 100.0% 34.1%
2eb4D00 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.52 46.0 2.90e-01 100.0% 26.5%
2okxA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 2.98e-01 100.0% 28.0%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 43.0 3.39e-01 100.0% 93.4%
2uvfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 47.0 3.54e-01 100.0% 56.9%
2kl6A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.22e-01 100.0% 41.7%
4apmA03 2.60.40.4360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 33.0 3.22e-01 100.0% 57.9%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.82 69.0 6.99e-01 96.1% 94.0%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.79 71.0 5.96e-01 100.0% 61.2%
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.78 68.0 6.14e-01 100.0% 72.5%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.76 68.0 6.15e-01 100.0% 76.8%
4021538 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.73 64.0 4.90e-01 100.0% 100.0%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.72 61.0 6.18e-01 94.1% 96.0%
5058703 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.70 59.0 4.81e-01 100.0% 85.7%
3623399 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.66 55.0 4.85e-01 100.0% 64.0%
3905375 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.66 44.0 3.73e-01 100.0% 42.4%
5055249 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 50.0 3.97e-01 100.0% 42.0%
3632391 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 47.0 3.54e-01 100.0% 35.7%
3242409 382.1.1.17 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ET 0.62 54.0 4.35e-01 100.0% 79.0%
3967982 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.61 45.0 3.79e-01 100.0% 48.2%
1621265 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.60 46.0 2.73e-01 100.0% 11.2%
3929557 382.1.1.17 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ET 0.60 53.0 4.77e-01 100.0% 91.4%
3247465 382.1.1.17 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ET 0.59 50.0 4.15e-01 100.0% 82.1%
4948582 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 46.0 3.69e-01 100.0% 45.3%
4969388 207.2.1.13 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.58 43.0 2.62e-01 100.0% 11.8%
4943498 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 43.0 4.13e-01 100.0% 68.3%
5005349 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 2.62e-01 100.0% 9.5%
3728675 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 3.53e-01 100.0% 41.9%
4972208 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.56 46.0 3.84e-01 92.2% 61.1%
3379879 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 43.0 3.01e-01 100.0% 26.9%
3615742 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 44.0 3.38e-01 100.0% 84.1%
3363323 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 42.0 2.87e-01 100.0% 23.9%
4017597 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 3.42e-01 100.0% 40.0%
5029597 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.41e-01 100.0% 42.9%
3529263 10.32.1.205 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ams1-like_1st 0.54 42.0 3.06e-01 100.0% 30.3%
3358112 323.1.1.8 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat 0.54 40.0 3.00e-01 86.3% 65.2%
2995054 10.2.1.54 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.53 45.0 3.02e-01 100.0% 39.2%
5060986 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.53 43.0 3.51e-01 100.0% 48.4%
3819163 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 45.0 3.55e-01 100.0% 73.6%
4863940 10.2.1.54 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N 0.51 44.0 3.25e-01 100.0% 61.8%
3785593 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.50 42.0 3.61e-01 100.0% 92.2%
3966404 3019.1.1.1 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.50 41.0 3.27e-01 100.0% 50.8%
221869 235.1.1.16 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Peptidase_U40 0.50 40.0 2.87e-01 92.2% 66.1%
D2 medium residues 4-54
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c2aA01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.61 49.0 4.25e-01 98.0% 58.9%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.60 49.0 4.28e-01 100.0% 58.9%
4f0cA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 43.0 3.35e-01 90.2% 35.5%
1k0oB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 40.0 3.20e-01 82.4% 33.3%
2ahmG01 6.10.250.2820 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 44.0 3.75e-01 98.0% 53.5%
3h2zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 38.0 2.77e-01 80.4% 26.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3597482 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 45.0 3.62e-01 70.6% 36.2%